View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_low_3 (Length: 568)

Name: NF17689_low_3
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_low_3
NF17689_low_3
[»] chr6 (10 HSPs)
chr6 (1-494)||(26651614-26652107)
chr6 (1-494)||(26757582-26758075)
chr6 (2-160)||(31289644-31289801)
chr6 (311-423)||(27421770-27421882)
chr6 (2-177)||(27421302-27421476)
chr6 (188-315)||(27421583-27421712)
chr6 (188-269)||(26632396-26632478)
chr6 (188-269)||(26738372-26738454)
chr6 (32-135)||(26632608-26632711)
chr6 (32-135)||(26738584-26738687)
[»] scaffold0003 (3 HSPs)
scaffold0003 (311-423)||(65481-65593)
scaffold0003 (2-177)||(65887-66061)
scaffold0003 (188-315)||(65651-65780)


Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 26652107 - 26651614
Alignment:
Q  1 atgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  26652107 atgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccga 26652008  T
Q  101 gaatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattctctgcaaagtaatgtacagttcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26652007 gaatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattctctgcaaagtaatgtacagttcag 26651908  T
Q  201 gaaatagaaactgattggttggtacccttccataattcattccaaagtaaagtggtttcaccatttcctgtctcactactaataagagttgcaaatcagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||    
T  26651907 gaaatagaaactgattggttggtacccttccataattcattcgaaagtaaagtggtttcaccatttcctatctcactactaacaagagttgctaaccagt 26651808  T
Q  301 ttcgttcaatgtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaact 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651807 ttcgttcaatgtcaaatatgtgccaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaataact 26651708  T
Q  401 taaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26651707 taaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc 26651614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 26758075 - 26757582
Alignment:
Q  1 atgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  26758075 atgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccga 26757976  T
Q  101 gaatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattctctgcaaagtaatgtacagttcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757975 gaatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattctctgcaaagtaatgtacagttcag 26757876  T
Q  201 gaaatagaaactgattggttggtacccttccataattcattccaaagtaaagtggtttcaccatttcctgtctcactactaataagagttgcaaatcagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| || ||||    
T  26757875 gaaatagaaactgattggttggtacccttccataattcattcgaaagtaaagtggtttcaccatttcctatctcactactaacaagagttgctaaccagt 26757776  T
Q  301 ttcgttcaatgtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaact 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26757775 ttcgttcaatgtcaaatatgtgccaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaataact 26757676  T
Q  401 taaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757675 taaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc 26757582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 31289801 - 31289644
Alignment:
Q  2 tgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccgag 101  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||  |||||||||||    
T  31289801 tgatgtgagccata-tctctgcactgccttcaataattcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccgag 31289703  T
Q  102 aatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgt 160  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  31289702 aatatgttgcactctctggcaaccatttatcaacatccagtacaggttgctgcagctgt 31289644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 311 - 423
Target Start/End: Original strand, 27421770 - 27421882
Alignment:
Q  311 gtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaacttaaaatatgg 410  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||| | ||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  27421770 gtcaaatatgtgctaaggtttttgaagttgatcatatgaatattcaattatatcttctaataatttctgtgattatatattgtaattacttagaatatgg 27421869  T
Q  411 aaagtatgggtag 423  Q
    |||||||||||||    
T  27421870 aaagtatgggtag 27421882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 27421302 - 27421476
Alignment:
Q  2 tgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccgag 101  Q
    |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||  ||||||||||| |||||| |||| ||||||| ||||| | |||    
T  27421302 tgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcattga-aaaacgcaaatttcacagctcttgataacatcctttctctgag 27421400  T
Q  102 aatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattct 177  Q
    |||||| || |||||| |||||| ||||| ||| |||  ||||||||| |||||||| ||||||| |||| |||||    
T  27421401 aatctgctgtactctccggcaacaatttaacaaaatctgatacaggttcctgcagctataaattttccaccattct 27421476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 27421583 - 27421712
Alignment:
Q  188 atgtacagttcaggaaatagaaactgattggttgg-tacccttccataattcattccaaagtaaagtgg-tttcaccatttcctgtctcactactaataa 285  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||| |||| |||||||||||||| || |||| |||| ||    
T  27421583 atgtacagttcaggaaatagaaactgattggttggttacacttccacaattcattgcaaagtaatgtggttttcaccatttcctatcgcacttctaagaa 27421682  T
Q  286 gagttgcaaatcagtttcgttcaatgtcaa 315  Q
    |||||||||| |||||| ||||||||||||    
T  27421683 gagttgcaaaccagtttggttcaatgtcaa 27421712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 26632478 - 26632396
Alignment:
Q  188 atgtacagttcaggaaatagaaactgattggttgg-tacccttccataattcattccaaagtaaagtggtttcaccatttcct 269  Q
    ||||||||||||||||||||||||||||| ||||| |||| | ||||| |||||| |||||||| ||| ||| ||||||||||    
T  26632478 atgtacagttcaggaaatagaaactgattcgttggttaccttcccatagttcattacaaagtaatgtgcttttaccatttcct 26632396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 26738454 - 26738372
Alignment:
Q  188 atgtacagttcaggaaatagaaactgattggttgg-tacccttccataattcattccaaagtaaagtggtttcaccatttcct 269  Q
    ||||||||||||||||||||||||||||| ||||| |||| | ||||| |||||| |||||||| ||| ||| ||||||||||    
T  26738454 atgtacagttcaggaaatagaaactgattcgttggttaccttcccatagttcattacaaagtaatgtgcttttaccatttcct 26738372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 26632711 - 26632608
Alignment:
Q  32 caataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccgagaatctgttgcactctctggcaaccatttat 131  Q
    |||||||||||| | |||||||| | |||||   |||| ||||   |||| ||||||| ||||||||||||||||||| | ||||| || |||||||||     
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtttccctctccggaaaccatttaa 26632612  T
Q  132 caac 135  Q
    ||||    
T  26632611 caac 26632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 26738687 - 26738584
Alignment:
Q  32 caataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccgagaatctgttgcactctctggcaaccatttat 131  Q
    |||||||||||| | |||||||| | |||||   |||| ||||   |||| ||||||| ||||||||||||||||||| | ||||| || |||||||||     
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtttccctctccggaaaccatttaa 26738588  T
Q  132 caac 135  Q
    ||||    
T  26738587 caac 26738584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 311 - 423
Target Start/End: Complemental strand, 65593 - 65481
Alignment:
Q  311 gtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaacttaaaatatgg 410  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||| | ||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  65593 gtcaaatatgtgctaaggtttttgaagttgatcatatgaatattcaattatatcttctaataatttctgtgattatatattgtaattacttagaatatgg 65494  T
Q  411 aaagtatgggtag 423  Q
    |||||||||||||    
T  65493 aaagtatgggtag 65481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 66061 - 65887
Alignment:
Q  2 tgatgtgaaccataatctctgcactgccttcaataattcatccttgaaatcattgggaaaacgcaaatatcacagatcttcataacattctttcaccgag 101  Q
    |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||  ||||||||||| |||||| |||| ||||||| ||||| | |||    
T  66061 tgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcattga-aaaacgcaaatttcacagctcttgataacatcctttctctgag 65963  T
Q  102 aatctgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgtaaatttgccactattct 177  Q
    |||||| || |||||| |||||| ||||| ||| |||  ||||||||| |||||||| ||||||| |||| |||||    
T  65962 aatctgctgtactctccggcaacaatttaacaaaatctgatacaggttcctgcagctataaattttccaccattct 65887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 65780 - 65651
Alignment:
Q  188 atgtacagttcaggaaatagaaactgattggttggt-acccttccataattcattccaaagtaaagtggttt-caccatttcctgtctcactactaataa 285  Q
    |||||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||||| ||||||| ||||||||||| || |||| |||| ||    
T  65780 atgtacagttcaggaaatagaaactgattggttggttacacttccacaattcattgcaaagtaatgtggttttcaccatttcctatcgcacttctaagaa 65681  T
Q  286 gagttgcaaatcagtttcgttcaatgtcaa 315  Q
    |||||||||| |||||| ||||||||||||    
T  65680 gagttgcaaaccagtttggttcaatgtcaa 65651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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