View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_5 (Length: 514)
Name: NF17689_low_5
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_5 |
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| [»] scaffold0820 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 55 - 496
Target Start/End: Complemental strand, 41086212 - 41085771
Alignment:
| Q |
55 |
ggcgcaacccgtgcgaacgcacgggtagagcactagtctagtgataaatgattattttagcttatgagactagtcaaaatgtcgagttctattacgggac |
154 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086212 |
ggcgcaacccgtgcgaacgcacgggtacagcactagtctagtgataaatgattattttagcttatgagactagtcaaaatgtcgagttctattacgggac |
41086113 |
T |
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| Q |
155 |
gggaccctnnnnnnnnnnnnnngacggagcatgaaggctagttatgtaaatgagtgaaggacattggtaacatgatgtgataattatcacataaataatg |
254 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086112 |
gggaccctaaaaaaccaaaaaagacggagcatgaaggctagttatgtaaatgagtgaaggacattggtaacatgatgtgataattatcacataaataatg |
41086013 |
T |
|
| Q |
255 |
aaagtaggaaagtcgttgttaaatcacacgagtagcaaagtctttggtaacacacacacgaggaaccaacaacaaacaagcaaagcaaagtcattgccgt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086012 |
aaagtaggaaagtcgttgttaaatcacacgagtagcaaagtctttggtaacacacacacgaggaaccaacaacaaacaagcaaagcaaagtcattgccgt |
41085913 |
T |
|
| Q |
355 |
gtttgacctgaactcaaacaggaacacaacctttttggcttatactctctcacacgacacaaattacacgccaatcaatcttaaatctcagatttcactt |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085912 |
gtttgacctgaactcaaacaggaacacaacctttttggcttatactctctcacacgacacaaattacacgccaatcaatcttaaatctcagatttcactt |
41085813 |
T |
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| Q |
455 |
cttgtctctcatttttccttgttaagcaatctatctatttct |
496 |
Q |
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| T |
41085812 |
cttgtctctcatttttccttgttaagcaatctatctatttct |
41085771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0820 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0820
Description:
Target: scaffold0820; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 436 - 481
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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| T |
436 |
tgcgccaacggcgcaacccgtgcggacgcacgggtacaacactagt |
481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 111588 - 111543
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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| T |
111588 |
tgcgccaacggcgcaacccatgcgaacgcacgggtacaacactagt |
111543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 11557959 - 11558004
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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||||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
11557959 |
tgcgccaacagcgcaacccgtgcgaacgcacgggtacaacactagt |
11558004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 41402225 - 41402268
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcacta |
89 |
Q |
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| T |
41402225 |
tgcgccaacggcgcaacctgtgcgaacgcacgagtacagcacta |
41402268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 22873544 - 22873588
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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||||||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
22873544 |
tgcgccaacggcgcaacccgtgcgaactcac-ggtacagcactagt |
22873588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 4102361 - 4102406
Alignment:
| Q |
46 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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|||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
4102361 |
tgcgccaacggcgcaacccgtgcggacgcacgggtacaacactagt |
4102406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 26440807 - 26440764
Alignment:
| Q |
48 |
cgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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| T |
26440807 |
cgccaacggcgcaacctgtgcgaacgcacgggtacaacactagt |
26440764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 22034300 - 22034258
Alignment:
| Q |
49 |
gccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
91 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||| |
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| T |
22034300 |
gccaacggcgcaacccgtgcgaacgcacggatacatcactagt |
22034258 |
T |
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