View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_low_6 (Length: 503)

Name: NF17689_low_6
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_low_6
NF17689_low_6
[»] chr4 (20 HSPs)
chr4 (227-501)||(19845513-19845769)
chr4 (245-375)||(5726127-5726257)
chr4 (248-350)||(20509381-20509483)
chr4 (250-351)||(25131440-25131541)
chr4 (230-311)||(40434110-40434191)
chr4 (243-298)||(10008594-10008649)
chr4 (266-375)||(5760007-5760115)
chr4 (230-354)||(54871822-54871946)
chr4 (266-349)||(296302-296385)
chr4 (266-310)||(9830388-9830432)
chr4 (268-351)||(11772927-11773010)
chr4 (269-311)||(5633865-5633907)
chr4 (260-306)||(13610004-13610050)
chr4 (227-300)||(18920879-18920952)
chr4 (266-311)||(29969581-29969626)
chr4 (268-300)||(7447440-7447472)
chr4 (266-298)||(19837816-19837848)
chr4 (323-375)||(33100962-33101014)
chr4 (266-298)||(38655788-38655820)
chr4 (323-375)||(40155761-40155813)
[»] scaffold0233 (1 HSPs)
scaffold0233 (243-351)||(10952-11060)
[»] chr7 (13 HSPs)
chr7 (266-375)||(16559097-16559206)
chr7 (266-375)||(16606456-16606565)
chr7 (227-311)||(38153631-38153715)
chr7 (264-311)||(34236226-34236273)
chr7 (238-311)||(14316452-14316525)
chr7 (224-300)||(27853844-27853920)
chr7 (243-311)||(29375747-29375815)
chr7 (225-311)||(34792063-34792149)
chr7 (228-300)||(37136591-37136663)
chr7 (266-349)||(40681711-40681794)
chr7 (227-300)||(40617783-40617856)
chr7 (270-356)||(10065354-10065440)
chr7 (260-306)||(9627196-9627242)
[»] chr1 (17 HSPs)
chr1 (237-356)||(42475294-42475413)
chr1 (17-63)||(23207061-23207107)
chr1 (269-349)||(44890076-44890156)
chr1 (269-351)||(51799562-51799644)
chr1 (266-351)||(31068692-31068776)
chr1 (225-298)||(36192184-36192257)
chr1 (267-311)||(27364803-27364847)
chr1 (266-310)||(36099609-36099653)
chr1 (238-348)||(25529085-25529195)
chr1 (227-311)||(23996136-23996220)
chr1 (266-350)||(25393327-25393411)
chr1 (227-302)||(12687171-12687246)
chr1 (234-311)||(29644406-29644482)
chr1 (269-311)||(3927626-3927669)
chr1 (266-311)||(9483859-9483904)
chr1 (227-348)||(23451097-23451217)
chr1 (266-298)||(32642552-32642584)
[»] chr5 (13 HSPs)
chr5 (227-311)||(30723559-30723643)
chr5 (230-311)||(8249518-8249599)
chr5 (224-336)||(12832525-12832637)
chr5 (224-336)||(12864500-12864612)
chr5 (227-311)||(22935574-22935658)
chr5 (224-300)||(32019043-32019119)
chr5 (248-342)||(25325117-25325211)
chr5 (227-302)||(7962191-7962266)
chr5 (268-312)||(23878014-23878058)
chr5 (224-310)||(15772769-15772855)
chr5 (225-298)||(3580979-3581052)
chr5 (271-311)||(26659653-26659693)
chr5 (271-311)||(26931244-26931284)
[»] chr3 (11 HSPs)
chr3 (229-375)||(35502902-35503048)
chr3 (245-375)||(18649897-18650027)
chr3 (224-346)||(45967984-45968106)
chr3 (266-375)||(18689339-18689447)
chr3 (230-298)||(22532982-22533050)
chr3 (269-311)||(25132774-25132816)
chr3 (225-298)||(19652143-19652216)
chr3 (230-298)||(29543447-29543515)
chr3 (230-298)||(42807350-42807418)
chr3 (269-351)||(41367732-41367814)
chr3 (268-309)||(25844735-25844775)
[»] chr6 (11 HSPs)
chr6 (266-375)||(2540558-2540667)
chr6 (268-356)||(34600889-34600977)
chr6 (268-356)||(34627434-34627522)
chr6 (225-298)||(17712981-17713054)
chr6 (266-350)||(12687193-12687277)
chr6 (255-311)||(32197865-32197921)
chr6 (268-356)||(34722166-34722254)
chr6 (227-311)||(10304210-10304290)
chr6 (229-300)||(32534099-32534170)
chr6 (246-303)||(9906145-9906202)
chr6 (266-298)||(33753598-33753630)
[»] chr2 (9 HSPs)
chr2 (238-351)||(21579656-21579769)
chr2 (224-300)||(24738781-24738857)
chr2 (267-311)||(20947114-20947158)
chr2 (268-311)||(16315197-16315240)
chr2 (248-350)||(30504720-30504822)
chr2 (227-300)||(1998752-1998825)
chr2 (268-351)||(12807580-12807663)
chr2 (271-352)||(10289498-10289579)
chr2 (284-354)||(12605885-12605955)
[»] chr8 (7 HSPs)
chr8 (266-311)||(460133-460178)
chr8 (260-351)||(43775253-43775344)
chr8 (266-311)||(16839304-16839349)
chr8 (221-298)||(7180085-7180162)
chr8 (260-340)||(38737424-38737504)
chr8 (245-297)||(41691166-41691218)
chr8 (268-300)||(17858184-17858216)
[»] scaffold0309 (1 HSPs)
scaffold0309 (281-342)||(727-788)
[»] scaffold0094 (1 HSPs)
scaffold0094 (238-311)||(25970-26043)
[»] scaffold0019 (1 HSPs)
scaffold0019 (269-324)||(49091-49146)
[»] scaffold0225 (1 HSPs)
scaffold0225 (258-375)||(5503-5620)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 227 - 501
Target Start/End: Original strand, 19845513 - 19845769
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttag 326  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||    
T  19845513 aggaaaataacttggattgattagaactctatctctcgtagtaaggaggttggtgatttgagggtaaggagaattagggagtttaactatgctcttttag 19845612  T
Q  327 ggaagtggtgttggcggttgttggtagagatggacattttttggtttagagtcgtggtgtcccggtatggtgtagtgggaagccggttggtggagggagg 426  Q
    | ||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||| |  | |||||||||||                  ||||||    
T  19845613 gtaagtggtgttggcggttgttggtggagagggatagtttttggtttagagtcgtggtggcgtgatatggtgtagt------------------gggagg 19845694  T
Q  427 ccgaaatgcctctacgtggtggcgggatatttctgccttgcgtggagagaagtggtttagcattcatctcagtcg 501  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||  |||| |||||||    
T  19845695 ccgaaatgcctctacgtggtggcgggacatttctaccttgcgtggagaggagtgatttagcggtcatatcagtcg 19845769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 5726127 - 5726257
Alignment:
Q  245 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggt 344  Q
    ||||||||| |||| ||  | ||||||||||||||||||||| ||||| ||||||||| ||||||||    || |||| || |||| |||||||||||||    
T  5726127 gattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggt 5726226  T
Q  345 tgttggtagagatggacattttttggtttag 375  Q
    ||||||| |||| ||| | ||| ||||||||    
T  5726227 tgttggtggagaaggagagtttatggtttag 5726257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 20509381 - 20509483
Alignment:
Q  248 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgt 347  Q
    |||||| |||| ||| | ||||||||||||||||| |||||||||||||| ||||| |||||||     |||||||||||||||||||||||| || |||    
T  20509381 tggaacactgtttgtaggagtaaggaggttggtgggttgggggtaaggagtattagagagtttaatatagctcttttagggaagtggtgttggaggatgt 20509480  T
Q  348 tgg 350  Q
    |||    
T  20509481 tgg 20509483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 25131541 - 25131440
Alignment:
Q  250 gaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 349  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||||||| | ||||  | ||||   |||||||||||  |||||||||| |||    
T  25131541 gaactcagtttgtagtagtaaggaggttggtggtttgggggtaaggagaattaggaaatttaatgttgcttcattagggaagtgtcgttggcggttattg 25131442  T
Q  350 gt 351  Q
    ||    
T  25131441 gt 25131440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 40434110 - 40434191
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||| |||| |||||||||| | ||| |||   ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40434110 aaaataacttgggttgattggaattatgtgtgtttgagtaaggaggttggtggtttgagggtaaggagaattagggagttta 40434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 10008594 - 10008649
Alignment:
Q  243 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  10008594 ttgattggaactctgtttgtatgagtaaggaggttggtggtttgggggtaaggaga 10008649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 5760007 - 5760115
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 365  Q
    ||||||||||||||||||||| || || ||||||||| ||||||||    || |||| || |||| |||||||||||||||||||| |||| ||| | ||    
T  5760007 agtaaggaggttggtggtttgcgg-tacggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggttgttggtggagaaggagagtt 5760105  T
Q  366 tttggtttag 375  Q
    | ||||||||    
T  5760106 tatggtttag 5760115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 54871946 - 54871822
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttaggga 329  Q
    ||||| |||||| | || ||||| ||||| ||||| ||| |||||||||| ||||||||||| |||||||| |  |||||||     ||  | |||||||    
T  54871946 aaaattatttgggtagactggaaatctgtttgtcggagtcaggaggttggaggtttgggggttaggagaataaaagagtttaatttagcattgttaggga 54871847  T
Q  330 agtggtgttggcggttgttggtaga 354  Q
    |||||||||||||| ||||||||||    
T  54871846 agtggtgttggcgggtgttggtaga 54871822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 296302 - 296385
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 349  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||   ||||  | ||||| |||||||||||| | ||||||    
T  296302 agtaaggaggttggtagtttgggggtaaggagaagtagggagattaataatgcgttgttaggtaagtggtgttggagattgttg 296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 9830388 - 9830432
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttt 310  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  9830388 agtaaggaggttggcggtttaggggtaaggataattagggagttt 9830432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 11772927 - 11773010
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    ||||||||||||   ||||||||||| ||||||||||||||||| |   || || || || |||||||||||| ||||||||||    
T  11772927 taaggaggttggcaatttgggggtaaagagaattagggagtttaacttggcactattgggtaagtggtgttggaggttgttggt 11773010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 5633865 - 5633907
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||    
T  5633865 aaggaggttggaggtttggaggtaaggagaattagtgagttta 5633907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 13610050 - 13610004
Alignment:
Q  260 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattaggga 306  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  13610050 tgtcgaagtcaggaggttggcggtttggggctaaggagaattaggga 13610004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 18920879 - 18920952
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||||| |||||| || ||| | | ||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  18920879 aggaaaattatttgggtttatttgcaatctatttgtcggagtcaggaggttggaggtttgggggtaaggagaat 18920952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 29969581 - 29969626
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||| ||||||||||||||| |||||||||| ||||||| |||||    
T  29969581 agtaaagaggttggtggtttgagggtaaggagtattagggtgttta 29969626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 7447472 - 7447440
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||||||||||||||||||||| ||||||||    
T  7447472 taaggaggttggtggtttgggggttaggagaat 7447440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 19837848 - 19837816
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||| |||||||||||||||||||||||||    
T  19837848 agtaagggggttggtggtttgggggtaaggaga 19837816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 33100962 - 33101014
Alignment:
Q  323 ttagggaagtggtgttggcggttgttggtagagatggacattttttggtttag 375  Q
    ||||||||||||||||||||| ||||||| |||| ||| | ||| ||||||||    
T  33100962 ttagggaagtggtgttggcgggtgttggtggagaaggagagtttgtggtttag 33101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 38655820 - 38655788
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||||||| |||||||||||||||||    
T  38655820 agtaaggaggttggttgtttgggggtaaggaga 38655788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 40155813 - 40155761
Alignment:
Q  323 ttagggaagtggtgttggcggttgttggtagagatggacattttttggtttag 375  Q
    |||||||||| |||||||||||||||||| || ||||| | ||| ||||||||    
T  40155813 ttagggaagtagtgttggcggttgttggtggatatggatagtttgtggtttag 40155761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 243 - 351
Target Start/End: Original strand, 10952 - 11060
Alignment:
Q  243 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||||| ||| |    |||| | ||||||||||||||||||||    
T  10952 ttgattggaacactgtctgtcggagtaaggaggttggtggtttgggtgttaggagaattagggtgttcaatattgctttattagggaagtggtgttggcg 11051  T
Q  343 gttgttggt 351  Q
    |||||||||    
T  11052 gttgttggt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 16559097 - 16559206
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 365  Q
    |||||||||||||||||||||||||||||||||||||| || ||||   ||||||| ||||| |||||||||||| ||||||||||||| | ||| | ||    
T  16559097 agtaaggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtt 16559196  T
Q  366 tttggtttag 375  Q
    | ||||||||    
T  16559197 tgtggtttag 16559206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 16606565 - 16606456
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 365  Q
    |||||||||||||||||||||||||||||||||||||| || ||||   ||||||| ||||| |||||||||||| ||||||||||||| | ||| | ||    
T  16606565 agtaaggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtt 16606466  T
Q  366 tttggtttag 375  Q
    | ||||||||    
T  16606465 tgtggtttag 16606456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 38153631 - 38153715
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||  |||| | ||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  38153631 aggaaaatagcttgggtggattggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagaattagtgagttta 38153715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 34236226 - 34236273
Alignment:
Q  264 gtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34236226 gtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 34236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 14316525 - 14316452
Alignment:
Q  238 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||| |||||| ||| |||||||||   |||||||||||||||||||||||||||||||||||||| |||||||    
T  14316525 ttgggttgattagaattctgtctgtttgagtaaggaggttggtggtttgggggtaaggagaattagagagttta 14316452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 27853844 - 27853920
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    ||||||||||| || ||| |||||||||| ||||| ||||| ||| |||||||||||||||||| ||||||||||||    
T  27853844 cataggaaaattatatgggttgattggaattctgtttgtcggagtcaggaggttggtggtttggaggtaaggagaat 27853920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 29375815 - 29375747
Alignment:
Q  243 ttgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||| |||  |||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  29375815 ttgattggaaatctagctgtaggagtaaggaggttggaggtttgggggtaaggagaattagggagttta 29375747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 34792063 - 34792149
Alignment:
Q  225 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||| | ||||||||||||| | |||||||||   |  | ||||||||||||||||||||||||||||||||| |||||||    
T  34792063 ataggaaaattacttggattgattgggagtctgtctgtttgaacagggaggttggtggtttgggggtaaggagaattagagagttta 34792149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 37136591 - 37136663
Alignment:
Q  228 ggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    ||||||| |||||| |||| || || ||| | ||||||||| |||||||||||||||||||||||||||||||    
T  37136591 ggaaaattatttgggttgactgaaaatctatatgtcgtagtcaggaggttggtggtttgggggtaaggagaat 37136663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 40681711 - 40681794
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 349  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||    |||  | ||||||||||||||||||| |||||||    
T  40681711 agtaaggaggttggtggttatggggtgaggagaattagggagtttaatagtgcattattagggaagtggtgttggcagttgttg 40681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 40617856 - 40617783
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||||| |||||| |||||||||| | ||| ||||| ||| |||||||||| |||||| |||||||||||||    
T  40617856 aggaaaattatttgggttgattggaattttgtttgtcggagtcaggaggttggaggtttgagggtaaggagaat 40617783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 10065440 - 10065354
Alignment:
Q  270 aggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 356  Q
    ||||||||||  |||||||||||||||||||||| || ||||     ||||||| |||||||||||||||| | |||||||| ||||    
T  10065440 aggaggttggcagtttgggggtaaggagaattagtgactttaatatagctctttcagggaagtggtgttggagattgttggtggaga 10065354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 9627196 - 9627242
Alignment:
Q  260 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattaggga 306  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||||    
T  9627196 tgtcgaagtcaggaggttggcggtttggggctaaggagaattaggga 9627242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 42475294 - 42475413
Alignment:
Q  237 tttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtg 336  Q
    |||||||||||||| | ||| ||| ||| ||| |||||||||| |||||||||||||||||||||||||| ||||     ||||||||||||||||||||    
T  42475294 tttggattgattggcagtctatctatcggagtcaggaggttggcggtttgggggtaaggagaattagggactttaatatagctcttttagggaagtggtg 42475393  T
Q  337 ttggcggttgttggtagaga 356  Q
    |||| | |||||||| ||||    
T  42475394 ttggagattgttggtggaga 42475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23207107 - 23207061
Alignment:
Q  17 aaatagttatttgttgtactgtcataataatttagtcgatttgctag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23207107 aaatagttatttgttgtactgtcataataatttagtcgatttgctag 23207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 44890156 - 44890076
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttg 349  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||    |||| | |||||||||||||||||||||||||||    
T  44890156 aaggaggttagtgatttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgttggcggttgttg 44890076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 51799562 - 51799644
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    |||||||||||||||||||||||||||||  ||||||||||||    |||  | || ||||||||||||||||||||||||||    
T  51799562 aaggaggttggtggtttgggggtaaggagttttagggagtttaatagtgccttattggggaagtggtgttggcggttgttggt 51799644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 31068692 - 31068776
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    |||||||||||| ||||||||||| ||| ||| |||||||||||||    |||| | |||||||||||||||||||||||||||||    
T  31068692 agtaaggaggttcgtggtttgggg-taatgagtattagggagtttaattttgctttattagggaagtggtgttggcggttgttggt 31068776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 36192184 - 36192257
Alignment:
Q  225 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||   |||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  36192184 ataggaaaattgcttgggttgattggaactctgtttgtatgagtaaggaggttggtggtttgggggtaaggaga 36192257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 27364847 - 27364803
Alignment:
Q  267 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  27364847 gtaaggaggttggtggtttaggggtaaggagaattagggagttta 27364803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 36099653 - 36099609
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttt 310  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  36099653 agtaaggaggttggtggtttgggcgtaaggagaattagggagttt 36099609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 25529085 - 25529195
Alignment:
Q  238 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgt 337  Q
    |||| |||||||||||  ||| ||| | |||| ||||||||||||||||||||| | ||||||||| |||||||  | |||| | || ||||| ||||||    
T  25529085 ttgggttgattggaacattgtatgtaggagtatggaggttggtggtttgggggtgatgagaattagagagtttaatgttgctttattggggaactggtgt 25529184  T
Q  338 tggcggttgtt 348  Q
    ||| |||||||    
T  25529185 tggaggttgtt 25529195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 23996136 - 23996220
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||| |||||| |||||||| | ||| | ||||| ||| |||||||||| |||  | ||||||||||||||||||||||||    
T  23996136 aggaaaattatttgggttgattggcagtctatttgtcggagtcaggaggttggaggtcagtgggtaaggagaattagggagttta 23996220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 25393411 - 25393327
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttgg 350  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||    |||||| || |||||||  |||||| |||||||||    
T  25393411 agtaaggaggttggtgttttgggggtaaggagaattctggagtttaatattgctctgttggggaagtaatgttggaggttgttgg 25393327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 12687171 - 12687246
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaatta 302  Q
    |||||||| |||||| |||| ||||| ||| | ||||| ||| |||||||||| || |||||||||||||||||||    
T  12687171 aggaaaatcatttgggttgactggaaatctatttgtcggagtcaggaggttggaggattgggggtaaggagaatta 12687246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 29644482 - 29644406
Alignment:
Q  234 taatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||| |||| ||||| ||||| |||   || ||||||||||||||||| ||||| |||||||||||||||||||    
T  29644482 taatttgggttgactggaattctgtttgtttgagaaaggaggttggtggttt-ggggtgaggagaattagggagttta 29644406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 3927669 - 3927626
Alignment:
Q  269 aaggaggttggtggtttgggggt-aaggagaattagggagttta 311  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  3927669 aaggaggttggtggtttgggggtaaaggagatttagggagttta 3927626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 9483859 - 9483904
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||| ||||||||||||| |||||||| ||||||| ||||||||    
T  9483859 agtaagaaggttggtggtttaggggtaagaagaattatggagttta 9483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 348
Target Start/End: Original strand, 23451097 - 23451217
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttag 326  Q
    |||||||||| ||||||||||||| | | | | ||||  ||| |||||||| | ||| ||||||| |||||||||||||| ||||    |||| | ||||    
T  23451097 aggaaaataacttggattgattggcaatttatttgtctgagtcaggaggtt-gaggtctgggggttaggagaattagggattttaattttgctgtattag 23451195  T
Q  327 ggaagtggtgttggcggttgtt 348  Q
    |||||||||| ||| |||||||    
T  23451196 ggaagtggtgctggaggttgtt 23451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 32642584 - 32642552
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||||||||| |||||||||||||||    
T  32642584 agtaaggaggttggtggcttgggggtaaggaga 32642552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 30723643 - 30723559
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||  |||| | ||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30723643 aggaaaatatcttgggtggattggaacactatttgtcgtggtaaggaggttggtggtttgggggtaaggagaattagggagttta 30723559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 8249599 - 8249518
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||| |||| |||||||||| | ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  8249599 aaaataacttgggttgattggaattatgtgtgtttgagtaaggaggttggtggtttgggggtaaggagaattagggagttta 8249518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 12832637 - 12832525
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 323  Q
    ||||||||||||  |||| | || |||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||||     |||||||    
T  12832637 cataggaaaatatcttgggtggactggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagtattagagagtttaatatcgctcttt 12832538  T
Q  324 tagggaagtggtg 336  Q
    |||||||||||||    
T  12832537 tagggaagtggtg 12832525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 12864612 - 12864500
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 323  Q
    ||||||||||||  |||| | || |||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||| |||||||     |||||||    
T  12864612 cataggaaaatatcttgggtggactggaacactgtttgtaggagtaaggaggttggtggtttgggggtaaggagtattagagagtttaatatcgctcttt 12864513  T
Q  324 tagggaagtggtg 336  Q
    |||||||||||||    
T  12864512 tagggaagtggtg 12864500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 22935574 - 22935658
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||| |||||||||||||| | ||| | ||||| ||| |||||||||| |||||||||||||||||||||||||| ||||    
T  22935574 aggaaaatattttggattgattggcaatctatttgtcggagtcaggaggttggcggtttgggggtaaggagaattagggatttta 22935658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 32019119 - 32019043
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    ||||| ||||| |||||| |||||||||| ||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  32019119 catagaaaaattatttgggttgattggaattctgtttgtcggagtcaggaggttggtggcttgggggtaaggagaat 32019043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 25325117 - 25325211
Alignment:
Q  248 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 342  Q
    ||||| ||||||||  | ||||||||||||||||| ||||||||||||||||||||||| ||||     ||| | ||||||||||||||||||||    
T  25325117 tggaattctgtctgcaggagtaaggaggttggtggattgggggtaaggagaattagggaatttaatttagctttattagggaagtggtgttggcg 25325211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 7962266 - 7962191
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaatta 302  Q
    |||||||| |||||| |||||||||| ||||| ||||| ||| |||| ||||| ||||||||||| ||||||||||    
T  7962266 aggaaaattatttgggttgattggaattctgtttgtcggagtcaggaagttggaggtttgggggttaggagaatta 7962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 23878014 - 23878058
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttag 312  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  23878014 taaggtggttggtggtttgggggtaaggtgaattagggagtttag 23878058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 15772769 - 15772855
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttt 310  Q
    |||||||||||  ||||| |||||||||||| ||| |||   || || |||||||| ||||||||||| || |||||||||||||||    
T  15772769 cataggaaaatcttttgggttgattggaactatgtttgtttgagaaaagaggttggaggtttgggggtcagcagaattagggagttt 15772855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 3580979 - 3581052
Alignment:
Q  225 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||   |||| |||| ||||||||||| |||   ||||||||||||||| |||||||||||||||||    
T  3580979 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaggttggtagtttgggggtaaggaga 3581052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 26659693 - 26659653
Alignment:
Q  271 ggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  26659693 ggaggttggtggtttgggggtaagaagtattagagagttta 26659653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 26931284 - 26931244
Alignment:
Q  271 ggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  26931284 ggaggttggtggtttgggggtaagaagtattagagagttta 26931244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 35502902 - 35503048
Alignment:
Q  229 gaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttaggg 328  Q
    |||||||  |||| |||| ||||| ||||| ||| | || ||||||||||| ||| |||||||||||||||||||||||||||    |||| | || |||    
T  35502902 gaaaatatcttgggttgactggaattctgtttgtgggaggaaggaggttggcggtctgggggtaaggagaattagggagtttaatagtgctttgtttggg 35503001  T
Q  329 aagtggtgttggcggttgttggtagagatggacattttttggtttag 375  Q
    ||||||||||||||||||||| | |||| ||| | ||| ||||||||    
T  35503002 aagtggtgttggcggttgttgatggagaaggagagtttgtggtttag 35503048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 18649897 - 18650027
Alignment:
Q  245 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggt 344  Q
    ||||||||| |||| ||  | ||||||||||||||||||||| ||||| ||||||||| ||||||||    || |||| || |||| |||||||||||||    
T  18649897 gattggaacactgtttgcaggagtaaggaggttggtggtttgcgggtatggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggt 18649996  T
Q  345 tgttggtagagatggacattttttggtttag 375  Q
    ||||||| |||| ||| | ||| ||||||||    
T  18649997 tgttggtggagaaggagagtttatggtttag 18650027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 346
Target Start/End: Complemental strand, 45968106 - 45967984
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttt 323  Q
    ||||| ||||| |||||| |||| ||| | ||| | ||||| ||| ||||||||||| |||||||| ||||||||||||||||||||| |  |||| | |    
T  45968106 catagaaaaatcatttgggttgactggcagtctatttgtcggagtcaggaggttggtagtttggggataaggagaattagggagtttaacattgctttat 45968007  T
Q  324 tagggaagtggtgttggcggttg 346  Q
    || |||||||||||||| |||||    
T  45968006 taaggaagtggtgttggaggttg 45967984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 18689339 - 18689447
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 365  Q
    ||||||||||||||||||||| || || ||||||||| ||||||||    || |||| || |||| |||||||||||||||||||| |||| ||| | ||    
T  18689339 agtaaggaggttggtggtttgcgg-tacggagaattaaggagtttaatattgttcttctaaggaaatggtgttggcggttgttggtggagaaggagagtt 18689437  T
Q  366 tttggtttag 375  Q
    | ||||||||    
T  18689438 tatggtttag 18689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 22532982 - 22533050
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||| |||||| |||| ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||    
T  22532982 aaaatcatttgggttgactggaaatctgtttgtcggagtaaggaggttggaggtctgggggtaaggaga 22533050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 25132816 - 25132774
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  25132816 aaggaggttggtggtttggggctaaggagaattagagagttta 25132774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 19652143 - 19652216
Alignment:
Q  225 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||   |||| |||| ||||||||||| |||   |||||||| ||||||||||||||||||||||||    
T  19652143 ataggaaaattgcttgggttgactggaactctgtttgtatgagtaaggaagttggtggtttgggggtaaggaga 19652216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 29543515 - 29543447
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||| |||||| |||||||||| ||||| ||||  ||| |||||||||| ||| ||||||||||||||    
T  29543515 aaaatcatttgggttgattggaaatctgtttgtcagagtcaggaggttggaggtctgggggtaaggaga 29543447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 42807418 - 42807350
Alignment:
Q  230 aaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||| |||||| |||| ||||| ||||| ||||| ||| |||||||||| ||| ||||||||||||||    
T  42807418 aaaatcatttgggttgactggaaatctgtttgtcggagtcaggaggttggaggtctgggggtaaggaga 42807350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 41367732 - 41367814
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| |  | |||| | || || |||||||||| | ||||||||||    
T  41367732 aaggaggttggtggtttgggggtaaagaggatttgggagttcaatgttgctttgttgggtaagtggtgttagaggttgttggt 41367814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 25844735 - 25844775
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtt 309  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  25844735 taaggaggttggtggttt-ggggtaatgagaattagggagtt 25844775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 2540667 - 2540558
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagatggacattt 365  Q
    |||||||||||||||||||||||| ||||||||||||| || ||||   ||||||| ||||| |||||||||||| |||||||| |||| | ||| | ||    
T  2540667 agtaaggaggttggtggtttggggataaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttgatagataaggatagtt 2540568  T
Q  366 tttggtttag 375  Q
    | ||||||||    
T  2540567 tgtggtttag 2540558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 34600977 - 34600889
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 356  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34600977 taaggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34600889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 34627522 - 34627434
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 356  Q
    |||||||||| |||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34627522 taaggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34627434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 17712981 - 17713054
Alignment:
Q  225 ataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||||||||   |||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||    
T  17712981 ataggaaaattgcttgggttgattggaactctgtttgtttaagtaaggaggttggtggtttgggggtaaggaga 17713054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 12687193 - 12687277
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttgg 350  Q
    |||||||||||||||||||||||||||||||| |||||||| || |     ||| | ||||||||||||||||||||| ||||||    
T  12687193 agtaaggaggttggtggtttgggggtaaggagtattagggaattcaatttagctttgttagggaagtggtgttggcggatgttgg 12687277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 32197921 - 32197865
Alignment:
Q  255 ctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||    
T  32197921 ctgtctgtcggggtaaggaggttggcggtttgggggttaggagaattagggagttta 32197865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 34722254 - 34722166
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagaga 356  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    |||  | ||| ||||||||||||||||| ||||||| ||||    
T  34722254 taaggaggttactggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggaga 34722166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 10304290 - 10304210
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||| |||| |||||||||||||||| |||     | | |||||||||||||||||||||||||||||||| |||||||    
T  10304290 aggaaaataacttgggttgattggaactctgtttgtt----tgaagaggttggtggtttgggggtaaggagaattagagagttta 10304210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 32534170 - 32534099
Alignment:
Q  229 gaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||| |||||| |||||||||| | ||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  32534170 gaaaattatttgggttgattggaattatgtttgtcgaagtcaggaggttggaggtttgggggtaaggagaat 32534099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 9906145 - 9906202
Alignment:
Q  246 attggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattag 303  Q
    ||||||| ||||||||  | ||||||||||||| ||||||||| ||||||||||||||    
T  9906145 attggaattctgtctgcaggagtaaggaggttgatggtttgggagtaaggagaattag 9906202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 33753598 - 33753630
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggaga 298  Q
    |||||||||| ||||||||||||||||||||||    
T  33753598 agtaaggaggctggtggtttgggggtaaggaga 33753630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 21579769 - 21579656
Alignment:
Q  238 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgt 337  Q
    |||| |||||||| | ||||| ||||| ||| || |||||||||||||| ||||||||||||||||||||||||    |||| | |||||||||||||||    
T  21579769 ttgggttgattggcattctgtttgtcggagtcagaaggttggtggtttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgt 21579670  T
Q  338 tggcggttgttggt 351  Q
    ||| ||||| ||||    
T  21579669 tggaggttgctggt 21579656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 24738781 - 24738857
Alignment:
Q  224 cataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    ||||||||||| || ||| |||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  24738781 cataggaaaattatatgggttgattggaattctgtttgtcggagtcaggaggttggtggtttgggggtaaggagaat 24738857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 20947114 - 20947158
Alignment:
Q  267 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20947114 gtaaggaggttggtggtttgggggtaaggagaattagggagttta 20947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 16315197 - 16315240
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  16315197 taaggaggttggtggtttgggggtaaggagaattagggaattta 16315240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 30504720 - 30504822
Alignment:
Q  248 tggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgt 347  Q
    ||||||||||| ||  | ||| ||| | ||||||||||||||||| ||||||||||||||||||    |||||| |||||||||| ||||||||  ||||    
T  30504720 tggaactctgtttgcaggagttaggggcttggtggtttgggggtacggagaattagggagtttaatattgctctgttagggaagtagtgttggcatttgt 30504819  T
Q  348 tgg 350  Q
    |||    
T  30504820 tgg 30504822  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 1998825 - 1998752
Alignment:
Q  227 aggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||||| |||||| |||||||| | ||| | ||||| ||| |||||||||| ||||||||||||||||||||    
T  1998825 aggaaaattatttgggttgattggcaatctatttgtcggagtcaggaggttggaggtttgggggtaaggagaat 1998752  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 12807580 - 12807663
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    |||||||||||||||||| ||||| | |||||||||||||||||      |||| |||||||||||||||||| | ||||||||    
T  12807580 taaggaggttggtggtttaggggttatgagaattagggagtttaatttatctctgttagggaagtggtgttggagattgttggt 12807663  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 10289498 - 10289579
Alignment:
Q  271 ggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggta 352  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |    || | ||||| |||||||||||| || ||||||||    
T  10289498 ggaggttggtggtttgggggtcaggagaattagagagtttaacttgtctttgttaggtaagtggtgttggaggatgttggta 10289579  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 12605885 - 12605955
Alignment:
Q  284 ttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtaga 354  Q
    |||| ||||||||||||||| || ||||  | |||| | |||||||||||||||||| |||||||| ||||    
T  12605885 ttggcggtaaggagaattagagattttaatgttgctttattagggaagtggtgttggaggttgttgataga 12605955  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 460178 - 460133
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  460178 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 460133  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 43775253 - 43775344
Alignment:
Q  260 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggt 351  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| ||||    |||||| ||||||||||| || ||| | ||||||||    
T  43775253 tgtcgtagtcaggaggttggcggtttgggggtaaggagaattagggactttaatattgctctgttagggaagtgatgctggagattgttggt 43775344  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 16839304 - 16839349
Alignment:
Q  266 agtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  16839304 agtaaggaggttggtggtttgggggtaaggagaattagagagttta 16839349  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 7180162 - 7180085
Alignment:
Q  221 gatcataggaaaataatttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggaga 298  Q
    ||||| || ||||| |||| | |||||||||| ||||| ||||| ||| |||||||| | ||||||||||||||||||    
T  7180162 gatcacagaaaaattatttaggttgattggaaatctgtttgtcggagtcaggaggtttgaggtttgggggtaaggaga 7180085  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 38737424 - 38737504
Alignment:
Q  260 tgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttgg 340  Q
    ||||| ||| |||||||||| ||||||||||| ||||||||||| || ||||     ||||| ||||||||||||||||||    
T  38737424 tgtcggagtcaggaggttggaggtttgggggttaggagaattagagattttaatttagctctattagggaagtggtgttgg 38737504  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 41691166 - 41691218
Alignment:
Q  245 gattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggag 297  Q
    |||||||||||||| ||||  | ||||| ||||||||||||||||||||||||    
T  41691166 gattggaactctgtttgtctgaataagggggttggtggtttgggggtaaggag 41691218  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 17858184 - 17858216
Alignment:
Q  268 taaggaggttggtggtttgggggtaaggagaat 300  Q
    |||||||||||||||||||||||| ||||||||    
T  17858184 taaggaggttggtggtttgggggttaggagaat 17858216  T

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Target: scaffold0309 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 727 - 788
Alignment:
Q  281 ggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcg 342  Q
    ||||||||||| ||||| || ||||||||||  | |||||| ||||||||||||||||||||    
T  727 ggtttgggggtcaggaggatgagggagtttaatgttgctctattagggaagtggtgttggcg 788  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 26043 - 25970
Alignment:
Q  238 ttggattgattggaactctgtctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagttta 311  Q
    ||||||||||| ||| | |||||||   |||||||| |||||||| |||||||| | |||||||||||||||||    
T  26043 ttggattgattagaattatgtctgtataagtaaggatgttggtggattgggggtcatgagaattagggagttta 25970  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 49091 - 49146
Alignment:
Q  269 aaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctctttt 324  Q
    |||||||||| |||||||||||||||||||||||  ||||||| |  |||||||||    
T  49091 aaggaggttgatggtttgggggtaaggagaattatagagtttaacattgctctttt 49146  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 5503 - 5620
Alignment:
Q  258 tctgtcgtagtaaggaggttggtggtttgggggtaaggagaattagggagtttagcgatgctcttttagggaagtggtgttggcggttgttggtagagat 357  Q
    ||||||| ||| |||||||||| |||||||||| ||||||| | |  || ||||     ||| | ||||||||||||||||||||| ||||||| ||||     
T  5503 tctgtcggagtcaggaggttggaggtttgggggcaaggagattaaaagaatttaatttagctttattagggaagtggtgttggcgggtgttggtggagaa 5602  T
Q  358 ggacattttttggtttag 375  Q
    ||| | ||| ||||||||    
T  5603 ggagagtttgtggtttag 5620  T

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