View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_8 (Length: 445)
Name: NF17689_low_8
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 43371424 - 43371004
Alignment:
| Q |
9 |
gaagaaaatcaaactcgtccaaaagcctccccatcaactccaaatcgttaacagaaccctcaagcgccttctgcactttctccaatttccccgcaacctc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371424 |
gaagcaaatcaaactcgtccaaaagcctccccatcaactccaaatcgttaacagaaccctcaagcgccttctgcactttctccaatttccccgcaacctc |
43371325 |
T |
|
| Q |
109 |
catttcctctttaaaagcactcataaactcctccctcaccgtcctactctgcgaaacctcaaattcctgactcaaaaacgcgattttcatattcggtttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371324 |
catttcctctttaaaagcactcataaactcctccctcaccgtcctactctgcgaaacctcaaattcctgactcaaaaacgcgattttcatattcggtttc |
43371225 |
T |
|
| Q |
209 |
gctttaatcacattccctgaatccggttcctccaaacccgcaataatcctcatctgtgttgtcttccccgcaccatttacaccaactaaacccactttct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371224 |
gctttaatcacattccctgaatccggttcctccaaacccgcaataatcctcatctgtgttgtcttccccgcaccatttacaccaactaaacccactttct |
43371125 |
T |
|
| Q |
309 |
caccctttttcacttcccaattaacctctttcaaaaccgtaacacctttgtaagtttttctaatattttctaacttcacaccagacgaaacgcttgaagc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371124 |
caccctttttcacttcccaattaacctctttcaaaaccgtaacacctttgtaagtttttctaatattttctaacttcacaccagacgaaacgcttgaagc |
43371025 |
T |
|
| Q |
409 |
accggtgttagattgtttatt |
429 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43371024 |
accggtgttagattgtttatt |
43371004 |
T |
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