View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_9 (Length: 435)
Name: NF17689_low_9
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 35583626 - 35583757
Alignment:
| Q |
152 |
cctggacggagtttgtttgtggcggtggtgggcaactgcgttgagttggggtgtgacttcagcctgtttctgctaaagcggcagccgcttcatttcgttt |
251 |
Q |
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| T |
35583626 |
cctggacggagtttgtttgtggcggaggtgggcaactgcgttgagttggggtgcgacttcagcctgtttctgctaaagcggcagccgcttcatttcattt |
35583725 |
T |
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| Q |
252 |
ttgtaaatggaacgcaactgctcagtttttgt |
283 |
Q |
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| T |
35583726 |
ttgtaaatggaacgcaactgctcagtttttgt |
35583757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 287 - 426
Target Start/End: Original strand, 35583809 - 35583948
Alignment:
| Q |
287 |
tgggctttttgtttcttttgaatttaaacatgtttgtaagtgagtgattagtctcacatcgactatgaatgagtcaaatgttcaagtgcaaataattaat |
386 |
Q |
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| T |
35583809 |
tgggctttttgtttctcttgaattcaaacatgtttgtaagtgactgattagtctcacatcaattatgaatgagtcaagtgttcaagtgcaaataattaat |
35583908 |
T |
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| Q |
387 |
ccgtcttttgatgtcctagaatattggccctttgctactc |
426 |
Q |
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| T |
35583909 |
ccctcttttgatgtcctagaatattgaccctttgttactc |
35583948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 35583317 - 35583368
Alignment:
| Q |
24 |
tcagacaccgacaacaacactgacaagtatgattagacttaattaagtggtg |
75 |
Q |
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| T |
35583317 |
tcagacaccgacaacaacactgacaagtatgattagacttaattaagtggtg |
35583368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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