View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1768_high_3 (Length: 350)
Name: NF1768_high_3
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 36935686 - 36935975
Alignment:
| Q |
6 |
gaaaatttgtttcatagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattacaaaacacattacatgatttt |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36935686 |
gaaaatttgtttcaaagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattaaaaaacacattacatgatttt |
36935785 |
T |
|
| Q |
106 |
ccttcatacacacagtagacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36935786 |
ccttcatacacacagtacacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt |
36935885 |
T |
|
| Q |
206 |
caggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc-gttgcagctttcacttgatccattttagcattctca |
294 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36935886 |
caggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgatccattttagcattctca |
36935975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 35098000 - 35097881
Alignment:
| Q |
179 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc |
278 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| || |
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|
| T |
35098000 |
aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc |
35097901 |
T |
|
| Q |
279 |
cattttagcattctcaggca |
298 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
35097900 |
cattttcgcattctcaggca |
35097881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 35098289 - 35098170
Alignment:
| Q |
179 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc |
278 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
35098289 |
aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc |
35098190 |
T |
|
| Q |
279 |
cattttagcattctcaggca |
298 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
35098189 |
cattttcgcattctcaggca |
35098170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 35072682 - 35072796
Alignment:
| Q |
179 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc |
278 |
Q |
| |
|
|||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35072682 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc |
35072781 |
T |
|
| Q |
279 |
cattttagcattctc |
293 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
35072782 |
cattttcgcattctc |
35072796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 36940478 - 36940596
Alignment:
| Q |
180 |
accagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatcc |
279 |
Q |
| |
|
|||||||||||||||||| || |||||| | ||||| | ||||| ||| ||||| || |||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
36940478 |
accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc |
36940577 |
T |
|
| Q |
280 |
attttagcattctcaggca |
298 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36940578 |
attttagcattctcaggca |
36940596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 35107179 - 35107064
Alignment:
| Q |
178 |
taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat |
277 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| | |||||| || || || || |||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
35107179 |
taaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgat |
35107080 |
T |
|
| Q |
278 |
ccattttagcattctc |
293 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
35107079 |
ccattttcgcattctc |
35107064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 36296455 - 36296566
Alignment:
| Q |
179 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc |
278 |
Q |
| |
|
|||||||||| ||||| | ||| || ||||| |||||||| ||||||||||| || || ||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
36296455 |
aaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatc |
36296554 |
T |
|
| Q |
279 |
cattttagcatt |
290 |
Q |
| |
|
||| || ||||| |
|
|
| T |
36296555 |
catcttggcatt |
36296566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 36953624 - 36953762
Alignment:
| Q |
165 |
ctcgattagtatctaaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattc--------t |
256 |
Q |
| |
|
||||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||| || || || ||| ||||||||||||| | |
|
|
| T |
36953624 |
ctcgattagtatc-aacctgggatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttaca--gagaacaccattctccatcagt |
36953720 |
T |
|
| Q |
257 |
ccgttgcagctttcacttgatccattttagcattctcaggca |
298 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
36953721 |
ccattgcagctttcacttgatccgttttagcattgtcaggca |
36953762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35097856 - 35097818
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35097856 |
cactgctacgctccacacgatgccattgatcgttcttat |
35097818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35098145 - 35098107
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35098145 |
cactgctacgctccacacgatgccattgatcgttcttat |
35098107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 36940621 - 36940659
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36940621 |
cactgctacgctccacgggatgccattgatcgttcttat |
36940659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 35072826 - 35072864
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
35072826 |
cactgctacgctccacacgatgccattgatcattcttat |
35072864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35107034 - 35106996
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
35107034 |
cactgctacgctccacacgatgccattgatcattcttat |
35106996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 36296599 - 36296635
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttctt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |
|
|
| T |
36296599 |
cactgctacgctccacgcgatgccattggttgttctt |
36296635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 36961545 - 36961469
Alignment:
| Q |
182 |
cagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc |
258 |
Q |
| |
|
||||||||||||||||||| ||| |||| || || || ||||| || || | || ||||||||||||||||||||| |
|
|
| T |
36961545 |
cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcc |
36961469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 24040737 - 24040852
Alignment:
| Q |
178 |
taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||| || || || || |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24040737 |
taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgat |
24040836 |
T |
|
| Q |
278 |
ccattttagcattctc |
293 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
24040837 |
ccattttcgcattctc |
24040852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 24014181 - 24014292
Alignment:
| Q |
179 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc |
278 |
Q |
| |
|
|||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24014181 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc |
24014280 |
T |
|
| Q |
279 |
cattttagcatt |
290 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
24014281 |
cattttcgcatt |
24014292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 24040882 - 24040920
Alignment:
| Q |
297 |
cactgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
24040882 |
cactgctacgctccacacgatgccattgatcattcttat |
24040920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 24014327 - 24014363
Alignment:
| Q |
299 |
ctgctacgctccacgcgatgccattgatcgttcttat |
335 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
24014327 |
ctgctgcgctccacacgatgccattgatcgttcttat |
24014363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 34919220 - 34919157
Alignment:
| Q |
235 |
gtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggca |
298 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||| || |||||||||||| |||||||||||| |
|
|
| T |
34919220 |
gtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggca |
34919157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 26579256 - 26579156
Alignment:
| Q |
198 |
cttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggc |
297 |
Q |
| |
|
|||||| ||||||||||||||||| | || || || ||||||| || |||||||||||| | |||||||||| | ||||| ||||||||||| ||| |
|
|
| T |
26579256 |
cttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggc |
26579157 |
T |
|
| Q |
298 |
a |
298 |
Q |
| |
|
| |
|
|
| T |
26579156 |
a |
26579156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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