View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1768_high_5 (Length: 321)

Name: NF1768_high_5
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1768_high_5
NF1768_high_5
[»] chr1 (2 HSPs)
chr1 (195-305)||(48538446-48538556)
chr1 (70-110)||(2089844-2089884)
[»] chr5 (1 HSPs)
chr5 (70-110)||(20464598-20464638)
[»] chr4 (1 HSPs)
chr4 (70-110)||(2443359-2443399)
[»] chr8 (1 HSPs)
chr8 (70-107)||(16821066-16821103)
[»] chr7 (4 HSPs)
chr7 (70-110)||(16679037-16679077)
chr7 (70-110)||(17653273-17653313)
chr7 (275-311)||(16678881-16678917)
chr7 (275-311)||(17653117-17653153)
[»] chr3 (2 HSPs)
chr3 (70-110)||(25483910-25483950)
chr3 (225-305)||(46868930-46869009)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 48538556 - 48538446
Alignment:
Q  195 tttatatattgaatttccctgacctttaactgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatct 294  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48538556 tttatatattgaatttccctgacctttaactatgtacctgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataattt 48538457  T
Q  295 gaggaggttca 305  Q
    |||||||||||    
T  48538456 gaggaggttca 48538446  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 2089884 - 2089844
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2089884 aagtattaagtgtaacatatatattggcctattattattag 2089844  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 20464638 - 20464598
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  20464638 aagtattaagtgtaacatatatattggcctattattattag 20464598  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 2443399 - 2443359
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2443399 aagtattaagtgtaacatatatattggcctattattattag 2443359  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 16821103 - 16821066
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattat 107  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16821103 aagtattaagtgtaacatatatattggcctattattat 16821066  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 16679077 - 16679037
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  16679077 aagtattaagtgtaacatatatattggcctatcattattag 16679037  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 17653313 - 17653273
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  17653313 aagtattaagtgtaacatatatattggcctatcattattag 17653273  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 16678917 - 16678881
Alignment:
Q  275 ctggtgcaaagttataatctgaggaggttcatgatga 311  Q
    |||||||||||||||||| |||||||||||| |||||    
T  16678917 ctggtgcaaagttataatttgaggaggttcaagatga 16678881  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 17653153 - 17653117
Alignment:
Q  275 ctggtgcaaagttataatctgaggaggttcatgatga 311  Q
    |||||||||||||||||| |||||||||||| |||||    
T  17653153 ctggtgcaaagttataatttgaggaggttcaagatga 17653117  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 25483910 - 25483950
Alignment:
Q  70 aagtattaagagtaacatatatattggcctattattattag 110  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  25483910 aagtattaagtgtaacatgtatattggcctattattattag 25483950  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 46868930 - 46869009
Alignment:
Q  225 tgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatctgaggaggttca 305  Q
    ||||||| |||||| |||||||   ||||||| ||||||||||| || | |||||||||||||||| | ||||||||||||    
T  46868930 tgtgtacctgcttgtaagacttctggtgtgtgcagtgacaagatcacag-ctggtgcaaagttatattttgaggaggttca 46869009  T

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