View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1768_high_6 (Length: 291)

Name: NF1768_high_6
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1768_high_6
NF1768_high_6
[»] chr4 (2 HSPs)
chr4 (1-226)||(23240634-23240862)
chr4 (212-281)||(23240884-23240953)
[»] chr1 (1 HSPs)
chr1 (1-188)||(8643748-8643935)
[»] chr3 (2 HSPs)
chr3 (123-211)||(10479257-10479346)
chr3 (214-269)||(10479581-10479636)
[»] chr2 (3 HSPs)
chr2 (206-281)||(16617288-16617363)
chr2 (1-104)||(13567071-13567174)
chr2 (206-251)||(25849040-25849085)
[»] chr6 (1 HSPs)
chr6 (1-65)||(19273305-19273369)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23240634 - 23240862
Alignment:
Q  1 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaat---actaattgtgatagtttcataaaaagcattcaaggtgtttga 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  23240634 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaataatactaattgtgatagtttcataaaaagcattcaaggtgtttga 23240733  T
Q  98 taaaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaata 197  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240734 taaaatgcccatatgaataatacattgttttttgagattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcgaaaaaata 23240833  T
Q  198 accaatggtataataaagttagaaaagca 226  Q
    |||||||||||||||||||||||||||||    
T  23240834 accaatggtataataaagttagaaaagca 23240862  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 23240884 - 23240953
Alignment:
Q  212 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240884 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 23240953  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8643748 - 8643935
Alignment:
Q  1 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataa 100  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||  ||| || ||| ||||||||||||||||||||    
T  8643748 attgttgtttagagtaggtttagatacaatgtggttgttttgaagtttaattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgataa 8643847  T
Q  101 aatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattc 188  Q
    |||||| |  ||||  || ||||||||||||| ||| |||||||||||||| | |||||||| ||||||||||||||| |||| ||||    
T  8643848 aatgcctaagtgaaacatccattgttttttgagattatcatagacaaatcttaagtgggatcattatgaattcagtatgaaataattc 8643935  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 10479257 - 10479346
Alignment:
Q  123 tgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcg-aaaaaataaccaatggtataat 211  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  10479257 tgttttttgagattctcatagacaaatctcatgtgggatctttctgaattcagtataaaatcatttgaaaaaaataatcaatggtataat 10479346  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 10479581 - 10479636
Alignment:
Q  214 agttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatg 269  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  10479581 agttataaaagcactatatagtcaatttatttgagttactttcaatattttgaatg 10479636  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 16617288 - 16617363
Alignment:
Q  206 tataataaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 281  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  16617288 tataatcaagttagaaaagcactatatagtcaatttagtttagttacttttaatattttgaatgatggttcctatg 16617363  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13567174 - 13567071
Alignment:
Q  1 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataa 100  Q
    |||||||| ||||||| |||||| |||||| ||||||||||||| || |||| | || |||||||| ||||| |||    ||| |||||||||||||| |    
T  13567174 attgttgtatagagtaggtttaggtacaatgtggttgttttgaagttgaatttacacaaattgtgacagttttatattttgcactcaaggtgtttgatga 13567075  T
Q  101 aatg 104  Q
    ||||    
T  13567074 aatg 13567071  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 25849040 - 25849085
Alignment:
Q  206 tataataaagttagaaaagcactatatagtcaatttagtttagtta 251  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||    
T  25849040 tataatcaagttataaaagcaatatatagccaatttagtttagtta 25849085  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19273369 - 19273305
Alignment:
Q  1 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtg 65  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||| ||| ||||||||||    
T  19273369 attgttgtttagagtaggtttaggtacaatgtagttgtttagatgttcaaataacactaattgtg 19273305  T

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