View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1768_low_10 (Length: 276)

Name: NF1768_low_10
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1768_low_10
NF1768_low_10
[»] chr3 (12 HSPs)
chr3 (73-270)||(9856430-9856627)
chr3 (196-248)||(17755844-17755896)
chr3 (196-248)||(19057164-19057216)
chr3 (196-248)||(9240746-9240798)
chr3 (196-248)||(25716844-25716896)
chr3 (196-247)||(25937844-25937895)
chr3 (134-192)||(9240859-9240917)
chr3 (132-192)||(5565074-5565134)
chr3 (138-188)||(9241009-9241059)
chr3 (138-192)||(17755736-17755790)
chr3 (138-192)||(19057056-19057110)
chr3 (132-176)||(837271-837315)
[»] chr8 (8 HSPs)
chr8 (193-248)||(13461805-13461860)
chr8 (196-248)||(38294910-38294962)
chr8 (133-190)||(604382-604439)
chr8 (193-228)||(38294969-38295004)
chr8 (133-190)||(604557-604614)
chr8 (143-192)||(13461879-13461928)
chr8 (143-192)||(31249373-31249422)
chr8 (196-248)||(39616915-39616967)
[»] chr5 (4 HSPs)
chr5 (196-248)||(7779559-7779611)
chr5 (133-192)||(7779439-7779498)
chr5 (133-192)||(14854327-14854386)
chr5 (143-192)||(3432999-3433048)
[»] chr7 (11 HSPs)
chr7 (134-192)||(4455363-4455421)
chr7 (196-248)||(16377562-16377614)
chr7 (196-248)||(4455482-4455534)
chr7 (196-248)||(16376422-16376474)
chr7 (196-246)||(5553812-5553862)
chr7 (133-189)||(4454919-4454975)
chr7 (133-176)||(23591481-23591524)
chr7 (133-192)||(38694861-38694920)
chr7 (198-248)||(24788724-24788774)
chr7 (143-192)||(16377478-16377527)
chr7 (196-228)||(5553869-5553901)
[»] scaffold0090 (1 HSPs)
scaffold0090 (196-248)||(12418-12470)
[»] chr2 (15 HSPs)
chr2 (196-248)||(17930418-17930470)
chr2 (190-247)||(41075759-41075816)
chr2 (190-247)||(41076324-41076381)
chr2 (196-248)||(11131355-11131407)
chr2 (134-192)||(15255830-15255888)
chr2 (196-248)||(38857747-38857799)
chr2 (132-192)||(41076470-41076530)
chr2 (133-176)||(29550128-29550171)
chr2 (133-192)||(38857854-38857913)
chr2 (200-247)||(41076042-41076089)
chr2 (134-176)||(3249867-3249909)
chr2 (134-188)||(17930535-17930589)
chr2 (193-225)||(11131313-11131345)
chr2 (196-248)||(15256501-15256553)
chr2 (193-229)||(17930476-17930512)
[»] chr6 (15 HSPs)
chr6 (194-248)||(12296005-12296059)
chr6 (197-247)||(17201476-17201526)
chr6 (196-248)||(24223463-24223515)
chr6 (132-192)||(24223576-24223636)
chr6 (134-192)||(12295927-12295985)
chr6 (198-248)||(17079943-17079993)
chr6 (134-190)||(17199982-17200038)
chr6 (196-248)||(24223108-24223160)
chr6 (133-192)||(16799563-16799622)
chr6 (193-228)||(17200571-17200606)
chr6 (145-192)||(17203662-17203709)
chr6 (196-246)||(6601875-6601925)
chr6 (194-228)||(16799510-16799544)
chr6 (134-192)||(17200320-17200378)
chr6 (133-190)||(24223211-24223268)
[»] chr4 (6 HSPs)
chr4 (196-246)||(19553377-19553427)
chr4 (130-192)||(46883329-46883391)
chr4 (197-248)||(9711335-9711385)
chr4 (196-243)||(29013796-29013843)
chr4 (133-188)||(47428297-47428352)
chr4 (193-247)||(46883410-46883466)
[»] chr1 (8 HSPs)
chr1 (196-268)||(41460966-41461043)
chr1 (196-248)||(11928311-11928363)
chr1 (196-248)||(49484051-49484103)
chr1 (196-247)||(52740982-52741033)
chr1 (196-248)||(46533030-46533082)
chr1 (206-248)||(23482588-23482630)
chr1 (133-174)||(6537500-6537541)
chr1 (196-248)||(41462629-41462681)
[»] scaffold0368 (1 HSPs)
scaffold0368 (196-243)||(279-326)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 73 - 270
Target Start/End: Complemental strand, 9856627 - 9856430
Alignment:
Q  73 agggaaaaggaataaaaatcttttatgnnnnnnnnnaaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaattta 172  Q
    ||||||||||||| |||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9856627 agggaaaaggaattaaaatcttttatgtttttttttaaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaactta 9856528  T
Q  173 accttataatttccctctaacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctccgatgagctttttattcatatca 270  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9856527 acctaataatttccctctaacagcaatttaatctaacaaatttcctctaaaatgcaaaaatccctaatatttctccgatgagcttttcattcatatca 9856430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 17755844 - 17755896
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17755844 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 17755896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 19057164 - 19057216
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  19057164 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 19057216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9240798 - 9240746
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  9240798 caatttaacctaacaaatttcctcaaaaatgcagcaatccctaatatttctcc 9240746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 25716896 - 25716844
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  25716896 caatttaagctaacaaattccctctaaaatgcagcaatccctaatatttctcc 25716844  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 25937844 - 25937895
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||||||||    
T  25937844 caatttaacctaacaaattccctctaacatgcagcaatccctaatatttctc 25937895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 9240917 - 9240859
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||||||||    
T  9240917 atccttatttattaattttattacgtctgcaacaacttaacctaataatttccctctaa 9240859  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 5565074 - 5565134
Alignment:
Q  132 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||  ||||||||||||||| |||| ||||| ||||||| ||| |||||||||||    
T  5565074 gtatccttaattattaattttattaggtctgcaacaacttaacctaatattttccctctaa 5565134  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 9241059 - 9241009
Alignment:
Q  138 ttatctattaattttattagatctgtaacaatttaaccttataatttccct 188  Q
    |||| ||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  9241059 ttatttattaattttattagctctgcaacaacttaacctaataatttccct 9241009  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 17755736 - 17755790
Alignment:
Q  138 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  17755736 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 17755790  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 19057056 - 19057110
Alignment:
Q  138 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  19057056 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 19057110  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 837315 - 837271
Alignment:
Q  132 gtatccttatctattaattttattagatctgtaacaatttaacct 176  Q
    |||||||||| ||||||||||||||  |||| |||||||||||||    
T  837315 gtatccttatttattaattttattatgtctgcaacaatttaacct 837271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 13461860 - 13461805
Alignment:
Q  193 cagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  13461860 cagcaatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 13461805  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 38294962 - 38294910
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  38294962 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 38294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 604439 - 604382
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 190  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604439 tatccttatttattaattttgttagatctgtagcaacttaacctaatattttccctct 604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 38295004 - 38294969
Alignment:
Q  193 cagcaatttaacctaacaaatttcctctaaaatgca 228  Q
    |||||||||||||||||||||||| |||||||||||    
T  38295004 cagcaatttaacctaacaaatttcatctaaaatgca 38294969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 604614 - 604557
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 190  Q
    ||||||| | |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604614 tatccttgtttattaattttgttagatctgtagcaacttaacctaatattttccctct 604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 13461928 - 13461879
Alignment:
Q  143 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||||||||||| || ||||| |||||||  ||||||||||||||    
T  13461928 tattaattttattagatttgcaacaagttaacctactaatttccctctaa 13461879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 31249422 - 31249373
Alignment:
Q  143 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||||||||||||| | ||| ||||| | |||||||||||||||    
T  31249422 tattaattttattagatctgcatcaacttaacataataatttccctctaa 31249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 39616967 - 39616915
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| || |||||||||    |||||||||||||||||    
T  39616967 caatttaacctaacaaattcccactaaaatgccgtgatccctaatatttctcc 39616915  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 7779559 - 7779611
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  7779559 caatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 7779611  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 7779439 - 7779498
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||| ||||||||||||||| |||  ||||| ||||||| |||||||||||||||    
T  7779439 tatccttatttattaattttattaggtctacaacaacttaacctaataatttccctctaa 7779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 14854327 - 14854386
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||| ||||||||||||||| | || | ||| ||||||| |||||||||||||||    
T  14854327 tatccttatttattaattttattaggtttgcagcaacttaacctaataatttccctctaa 14854386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 3432999 - 3433048
Alignment:
Q  143 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||||||||||| || ||||| ||||||| ||||||| |||||||    
T  3432999 tattaattttattagatttgcaacaacttaacctaataattttcctctaa 3433048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 4455363 - 4455421
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  4455363 atccttatttattaattttattaggtctgcaacaatttaacctaataatttccctctaa 4455421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 16377614 - 16377562
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  16377614 caatttaacctatcaaatttcctctaaaatgcagcaatccctaatatttctcc 16377562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 4455482 - 4455534
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||| |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  4455482 caatataacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 4455534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 16376474 - 16376422
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  16376474 caatttaacctaacaaattccctctaaagtgcagcaatccctaatatttctcc 16376422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 5553862 - 5553812
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 246  Q
    |||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  5553862 caatttaacctaacaaattctctctaaaatgcaacaatccttaatatttct 5553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 4454919 - 4454975
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctc 189  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||||    
T  4454919 tatccttatttattaattttattaggtctgcaacaacttaacctaatattttccctc 4454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 23591524 - 23591481
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaacct 176  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||    
T  23591524 tatccttatttattaattttgttagatctgcaacaatttaacct 23591481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 38694920 - 38694861
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||| |||||| |||||||| |||| | ||| ||||||| |||||||||||||||    
T  38694920 tatccttatttattaagtttattaggtctgcagcaacttaacctaataatttccctctaa 38694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 24788774 - 24788724
Alignment:
Q  198 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||| | ||||||||  |||| |||||||||||||    
T  24788774 atttaacctaacaaatttccacaaaaatgcagcaatcactaatatttctcc 24788724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 16377527 - 16377478
Alignment:
Q  143 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||||||||||||| |  || ||||||| |||||||||||||||    
T  16377527 tattaattttattagatctgcagtaacttaacctaataatttccctctaa 16377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 5553901 - 5553869
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgca 228  Q
    ||||||||||||||||||||| |||||||||||    
T  5553901 caatttaacctaacaaatttcatctaaaatgca 5553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 12470 - 12418
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  12470 caatttaacctaacaaattccctctaaaatacaacaatccctaatatttctcc 12418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 17930470 - 17930418
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  17930470 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 17930418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 41075816 - 41075759
Alignment:
Q  190 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41075816 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41075759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 41076381 - 41076324
Alignment:
Q  190 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076381 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 11131355 - 11131407
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  11131355 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 11131407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 15255888 - 15255830
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||| ||||||||| ||||| |||| ||||| ||||||| |||||||||||||||    
T  15255888 atccttatttattaatttaattaggtctgcaacaacttaacctaataatttccctctaa 15255830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 38857799 - 38857747
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||| |||||  || |||||||||| ||||||||||||||||||    
T  38857799 caatttaacctaataaattctctttaaaatgcaacaatccctaatatttctcc 38857747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 41076530 - 41076470
Alignment:
Q  132 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||| ||||||||||||||  |||| ||||| ||||||| |||||||| ||||||    
T  41076530 gtatccttatttattaattttattaagtctgcaacaacttaacctaataatttctctctaa 41076470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 29550128 - 29550171
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaacct 176  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  29550128 tatccttatttattaattttattaggtctgcaacaatttaacct 29550171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 38857913 - 38857854
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||| ||||||||||||||| ||| || ||| ||||| | |||||||||||||||    
T  38857913 tatccttatttattaattttattaggtctatagcaacttaacttaataatttccctctaa 38857854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 41076089 - 41076042
Alignment:
Q  200 ttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076089 ttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 3249909 - 3249867
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaacct 176  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  3249909 atccttatttattaattttgttagatctgcaacaatttaacct 3249867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 17930589 - 17930535
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccct 188  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||||    
T  17930589 atccttatttattaattttattaggtctgcaacaacttaacctaataattcccct 17930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 11131313 - 11131345
Alignment:
Q  193 cagcaatttaacctaacaaatttcctctaaaat 225  Q
    |||||||||||||||||||||||| ||||||||    
T  11131313 cagcaatttaacctaacaaatttcatctaaaat 11131345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 15256553 - 15256501
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||| |||||||||  |||||||||||||  ||| ||||||||||||||    
T  15256553 caatttaaactaacaaataccctctaaaatgcagcaattcctaatatttctcc 15256501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 17930512 - 17930476
Alignment:
Q  193 cagcaatttaacctaacaaatttcctctaaaatgcaa 229  Q
    |||||||||||||||||||||| | ||||||||||||    
T  17930512 cagcaatttaacctaacaaattccatctaaaatgcaa 17930476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 12296005 - 12296059
Alignment:
Q  194 agcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  12296005 agcaatttaacctaacaaattccctctaaaatgcagcaatctctaatatttctcc 12296059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 17201476 - 17201526
Alignment:
Q  197 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  17201476 aatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctc 17201526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 24223515 - 24223463
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  24223515 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 24223463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 24223636 - 24223576
Alignment:
Q  132 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||| ||||||||||||||| |||| | ||| ||||||| |||||||||||||||    
T  24223636 gtatccttatttattaattttattaggtctgcagcaacttaacctaataatttccctctaa 24223576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 12295927 - 12295985
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| || ||||||||||||    
T  12295927 atccttatttattaattttattaggtctgcaacaacttaacctaatgatttccctctaa 12295985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 17079993 - 17079943
Alignment:
Q  198 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    ||||||||||||||||| |||||||||||||  ||||| ||||||||||||    
T  17079993 atttaacctaacaaattccctctaaaatgcagcaatccttaatatttctcc 17079943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 17199982 - 17200038
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 190  Q
    |||||||| |||||||||| |||| |||||| ||||||||||| ||| |||||||||    
T  17199982 atccttatttattaattttgttaggtctgtagcaatttaacctaatattttccctct 17200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 24223160 - 24223108
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||| ||||||  ||||||||||||  ||||||||||||||||||    
T  24223160 caatttaacctatcaaattcactctaaaatgcagcaatccctaatatttctcc 24223108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 16799622 - 16799563
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||| ||||||||||||||| |||| | ||| | ||||| |||||||||||||||    
T  16799622 tatccttatttattaattttattaggtctgcagcaactgaacctaataatttccctctaa 16799563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 17200571 - 17200606
Alignment:
Q  193 cagcaatttaacctaacaaatttcctctaaaatgca 228  Q
    |||||||||||||||||||||||| |||||||||||    
T  17200571 cagcaatttaacctaacaaatttcatctaaaatgca 17200606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 17203662 - 17203709
Alignment:
Q  145 ttaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    ||||||||||||| |||| ||||| ||||||| |||||||||||||||    
T  17203662 ttaattttattaggtctgcaacaacttaacctaataatttccctctaa 17203709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 6601925 - 6601875
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 246  Q
    |||||| |||||||||||| |||||||||||||  |||| |||||||||||    
T  6601925 caatttcacctaacaaattccctctaaaatgcagcaatctctaatatttct 6601875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 16799544 - 16799510
Alignment:
Q  194 agcaatttaacctaacaaatttcctctaaaatgca 228  Q
    ||||||||||||||||||||||| |||||||||||    
T  16799544 agcaatttaacctaacaaatttcatctaaaatgca 16799510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 17200320 - 17200378
Alignment:
Q  134 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||| ||||||||||||||| |||| | ||| ||||||| ||||||||| |||||    
T  17200320 atccttatttattaattttattaggtctgcagcaacttaacctaataatttccttctaa 17200378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 24223268 - 24223211
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 190  Q
    ||||||||| ||||||||||||| | |||| | ||| ||||||| |||||||||||||    
T  24223268 tatccttatttattaattttatttggtctgcatcaacttaacctaataatttccctct 24223211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 19553377 - 19553427
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 246  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  19553377 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttct 19553427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 46883329 - 46883391
Alignment:
Q  130 ttgtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 192  Q
    |||||||||||| ||||||||||||||| |||| || || ||||||| |||||||||||||||    
T  46883329 ttgtatccttatttattaattttattaggtctgcaataacttaacctaataatttccctctaa 46883391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 9711335 - 9711385
Alignment:
Q  197 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  9711335 aatttaacctaacaaatttcatctaaaatgcaacaat-tctaatatttctcc 9711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 29013843 - 29013796
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 243  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  29013843 caatttaacttaacaaattccctctaaaatgcagcaatccctaatatt 29013796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 47428352 - 47428297
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccct 188  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||| ||| |||||||    
T  47428352 tatccttatttattaattttgttagatctacaacaatttaacctaatattttccct 47428297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 46883410 - 46883466
Alignment:
Q  193 cagcaatttaacctaacaaatttcctc--taaaatgcaaaaatccctaatatttctc 247  Q
    |||||||||||||||||||||| ||||  |||||||||  |||||||| ||||||||    
T  46883410 cagcaatttaacctaacaaattacctctttaaaatgcagcaatccctattatttctc 46883466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 41460966 - 41461043
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc-----gatgagctttttattcatat 268  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||     ||||||||||| ||||||||    
T  41460966 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcctcactgatgagcttttcattcatat 41461043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 11928311 - 11928363
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  11928311 caatttaacctaacaatttccctctaaaatgcagcaatccctaatatttctcc 11928363  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 49484051 - 49484103
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||||||||||    
T  49484051 caatttaacctaacaaattctctctaacatgcaacaatccctaatatttctcc 49484103  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 52740982 - 52741033
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 247  Q
    ||||||||||||||||||||| | |||||||||  |||||||||||||||||    
T  52740982 caatttaacctaacaaatttcatttaaaatgcagcaatccctaatatttctc 52741033  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 46533030 - 46533082
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||  ||||||||||| | ||||| ||||||||||||    
T  46533030 caatttaacctaacaaattatctctaaaatgctacaatccataatatttctcc 46533082  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 23482630 - 23482588
Alignment:
Q  206 taacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||||||||||||||  |||| |||||||||||||    
T  23482630 taacaaatttcctctaaaatgcagcaatctctaatatttctcc 23482588  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 6537541 - 6537500
Alignment:
Q  133 tatccttatctattaattttattagatctgtaacaatttaac 174  Q
    ||||||||| |||||||||| |||| ||||||||||||||||    
T  6537541 tatccttatttattaattttgttaggtctgtaacaatttaac 6537500  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 41462629 - 41462681
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 248  Q
    |||||||||||| |||| | ||||||||||| |  ||||||||||||||||||    
T  41462629 caatttaacctatcaaactccctctaaaatgtagcaatccctaatatttctcc 41462681  T

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Target: scaffold0368 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 326 - 279
Alignment:
Q  196 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 243  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  326 caatttaacctaacaaattccctataaaatgcagcaatccctaatatt 279  T

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