View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1768_low_12 (Length: 253)

Name: NF1768_low_12
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1768_low_12
NF1768_low_12
[»] chr4 (4 HSPs)
chr4 (18-243)||(46865563-46865788)
chr4 (15-200)||(46901433-46901622)
chr4 (20-105)||(46874370-46874455)
chr4 (54-110)||(46892226-46892282)
[»] chr8 (1 HSPs)
chr8 (18-234)||(22689866-22690088)
[»] chr3 (5 HSPs)
chr3 (20-200)||(19847177-19847360)
chr3 (54-173)||(27310811-27310930)
chr3 (54-124)||(27300956-27301026)
chr3 (18-46)||(27310665-27310693)
chr3 (215-243)||(27310977-27311005)
[»] chr5 (2 HSPs)
chr5 (87-195)||(27441080-27441188)
chr5 (17-61)||(27441022-27441066)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 46865563 - 46865788
Alignment:
Q  18 tggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865563 tggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttct 46865662  T
Q  118 tgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggattctactccacagacagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865663 tgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggattctactccacagacagaa 46865762  T
Q  218 ttttggaaacatggtcattggtgatg 243  Q
    ||||||||||||||||||||||||||    
T  46865763 ttttggaaacatggtcattggtgatg 46865788  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 46901433 - 46901622
Alignment:
Q  15 tcatggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaatta---aacaagatcaatcgtgtttatggtgattggattgatgattc 111  Q
    ||||| ||||||| |||||||||| |||||||| ||| |||||| |||||||||||   || ||||||||| || ||||||||||||||||||||||||     
T  46901433 tcatgacaaaggatgaggagcaggataagaagaagcacttacttaggttgaaattaggcaagaagatcaatggtatttatggtgattggattgatgattg 46901532  T
Q  112 acttcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaaca-cccttcatctggataaggatt 200  Q
    ||  |||||| |||||||| |||| |||||| |||||| ||||  |||  |||||||||||||||||| ||| ||||||| |||||||||    
T  46901533 accacttgtttttcccaacttgcctagtgcaatggagacctgaagtgaactttgtgctcttggaaacaccccctcatctgtataaggatt 46901622  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 46874370 - 46874455
Alignment:
Q  20 gcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattga 105  Q
    |||||||||||||||||||| |||||||  | | ||||| |||||||||| | | ||||||||||| |||| ||||||||||||||    
T  46874370 gcaaaggaagaggagcaggcaaagaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 46874455  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 46892226 - 46892282
Alignment:
Q  54 tactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgatt 110  Q
    ||||| |||||||||| | | ||||||||||| |||| |||||||||||||||||||    
T  46892226 tacttgggttgaaattcagccagatcaatcgtatttacggtgattggattgatgatt 46892282  T

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Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 22690088 - 22689866
Alignment:
Q  18 tggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagat---caatcgtgtttatggtgattggattgatgattcact 114  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    ||||  | | |||| ||||||||||||||||||||     
T  22690088 tggcaaaggaagaggagcaggctaagaagaagcgtttactttggttgaaattaaacaagaagaccaatactatatatgctgattggattgatgattcacc 22689989  T
Q  115 tcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaaca-cccttcatctggataaggattctactccacagac 213  Q
    |||| |||| ||||||  ||||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| |||| | |||    
T  22689988 tcttattctacccaactagccaagtgcagaggagacctgagttgaattttgtgctcttggaaacaccccctcatctggataatgattcttctccgctgac 22689889  T
Q  214 --agaattttggaaacatggtca 234  Q
      |||||||||||||||| ||||    
T  22689888 aaagaattttggaaacatcgtca 22689866  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19847177 - 19847360
Alignment:
Q  20 gcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaaca---agatcaatcgtgtttatggtgattggattgatgattcacttc 116  Q
    |||||||||| |||||| |||||||||| || ||||||||||| |||||||||||   ||||||||  | | |||| |||||||||||||||||||  ||    
T  19847177 gcaaaggaagtggagcaagctaagaagaagcctttactttggtggaaattaaacacgaagatcaatactatatatgctgattggattgatgattcatctc 19847276  T
Q  117 ttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttcatctggataaggatt 200  Q
    ||||| |||||||| |||||||||||| ||||| || |||||| |||||||||||||||||| | |||||||||||||||||||    
T  19847277 ttgtttttcccaacttgccaagtgcagaggagatctaagttgaattttgtgctcttggaaactcacttcatctggataaggatt 19847360  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 27310811 - 27310930
Alignment:
Q  54 tactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttcttgttcttcccaacctgccaagtgcagtggagaactg 153  Q
    ||||| |||| ||||| | ||||||||||||| ||||||||||||| |||||||||| |  |||||||||||| ||  ||| ||||||| |||||| ||     
T  27310811 tacttgggttaaaattcagcaagatcaatcgtatttatggtgattgaattgatgattgaactcttgttcttccaaagttgctaagtgcaatggagacctc 27310910  T
Q  154 agttgagttttgtgctcttg 173  Q
    |||||| |||||||||||||    
T  27310911 agttgaattttgtgctcttg 27310930  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 27300956 - 27301026
Alignment:
Q  54 tactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgattcacttcttgttctt 124  Q
    ||||| |||||||||| | | ||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  27300956 tacttgggttgaaattcagcgagatcaatcgtatttatggtgattggattgatgatcgacttcttgttctt 27301026  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 27310665 - 27310693
Alignment:
Q  18 tggcaaaggaagaggagcaggctaagaag 46  Q
    |||||||||||||||||||||||||||||    
T  27310665 tggcaaaggaagaggagcaggctaagaag 27310693  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 27310977 - 27311005
Alignment:
Q  215 gaattttggaaacatggtcattggtgatg 243  Q
    |||||||||||||||||||||||||||||    
T  27310977 gaattttggaaacatggtcattggtgatg 27311005  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 27441080 - 27441188
Alignment:
Q  87 tttatggtgattggattgatgattcacttcttgttcttcccaacctgccaagtgcagtggagaactgagttgagttttgtgctcttggaaacacccttca 186  Q
    |||||||||||||||| ||||||| |  |||||||||||||||| ||||||||| || | |||  |||||||| |||||||||||||||||| |||||||    
T  27441080 tttatggtgattggatcgatgattaaactcttgttcttcccaacttgccaagtgaagagaagacatgagttgaattttgtgctcttggaaactcccttca 27441179  T
Q  187 tctggataa 195  Q
    |||||||||    
T  27441180 tctggataa 27441188  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27441022 - 27441066
Alignment:
Q  17 atggcaaaggaagaggagcaggctaagaagatgcatttactttgg 61  Q
    |||||||||||| ||||||| |||||||||| || ||||||||||    
T  27441022 atggcaaaggaaaaggagcaagctaagaagaagcctttactttgg 27441066  T

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