View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1768_low_16 (Length: 229)
Name: NF1768_low_16
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 36961341 - 36961527
Alignment:
| Q |
16 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36961341 |
gagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
36961440 |
T |
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| Q |
116 |
taagatggatcaagtgaatgcaaacat-ggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcctggagtta |
201 |
Q |
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| T |
36961441 |
taagatggatcaggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaaacctggagtta |
36961527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 35097805 - 35097959
Alignment:
| Q |
27 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
126 |
Q |
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||||||||||||||||||| | || |||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| | |||||||| || ||||| | |
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| T |
35097805 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35097904 |
T |
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| Q |
127 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
181 |
Q |
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| T |
35097905 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35097959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 35098094 - 35098248
Alignment:
| Q |
27 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
126 |
Q |
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| T |
35098094 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggacc |
35098193 |
T |
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| Q |
127 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
181 |
Q |
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||||||| || ||||||||||||||||||||||| ||| |||| || ||||| |
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| T |
35098194 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaaga |
35098248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 36296661 - 36296493
Alignment:
| Q |
16 |
gagagagaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgc |
115 |
Q |
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||||||| | ||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| || || ||||||| ||| |||||| | || ||||| |
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| T |
36296661 |
gagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgc |
36296562 |
T |
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| Q |
116 |
taagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
184 |
Q |
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| T |
36296561 |
caagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagt |
36296493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 35106984 - 35107137
Alignment:
| Q |
28 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
127 |
Q |
| |
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|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||||| |
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| T |
35106984 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatca |
35107083 |
T |
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| Q |
128 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaaga |
181 |
Q |
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|||||| || |||||||||||||||||| |||| ||| | ||||||||||| |
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| T |
35107084 |
agtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaaga |
35107137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 35072876 - 35072720
Alignment:
| Q |
28 |
ttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatca |
127 |
Q |
| |
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|||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| |||||||| |||||||||| || |||||||| |
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| T |
35072876 |
ttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatca |
35072777 |
T |
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| Q |
128 |
agtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
184 |
Q |
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|||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
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| T |
35072776 |
agtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
35072720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 36940678 - 36940536
Alignment:
| Q |
21 |
agaagcgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaaga |
120 |
Q |
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||||||||||||||||||||||||| | || ||||||||| |||||||| |||||||||||| |||||||||| || |||||| | ||||||||||| | |
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| T |
36940678 |
agaagcgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaa |
36940579 |
T |
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| Q |
121 |
tggatcaagtgaatgcaaacatggagaatggtgttctcactgt |
163 |
Q |
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|||||||| |||| || ||||||||||| |||||||||| |
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| T |
36940578 |
tggatcaaatgaaagctgcaatggagaatggcattctcactgt |
36940536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 24040934 - 24040766
Alignment:
| Q |
26 |
cgttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggat |
125 |
Q |
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|||||| ||||||||||||| || |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || |||||| |
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| T |
24040934 |
cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat |
24040835 |
T |
|
| Q |
126 |
caagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagtgaaaaagcct |
194 |
Q |
| |
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|||||||| || |||||||||||| |||||||||| ||| | |||||||||||||| || |||||| |
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| T |
24040834 |
caagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcct |
24040766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 24014376 - 24014219
Alignment:
| Q |
27 |
gttgagaaagaagataagagcaatgaatggcatcgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatc |
126 |
Q |
| |
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||||||||||||||||||| | || |||||||||| ||||||| ||||| || || |||||||||| || || ||| | || ||||| || ||||||| |
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| T |
24014376 |
gttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatc |
24014277 |
T |
|
| Q |
127 |
aagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaaggaagaagt |
184 |
Q |
| |
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||||||| || ||||||||||||||||||||||| ||| |||| || |||||||| |
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|
| T |
24014276 |
aagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagt |
24014219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 34919131 - 34919237
Alignment:
| Q |
77 |
tgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaagtgaatgcaaacatggagaatggtgttctcactgtaactattcctaag |
176 |
Q |
| |
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|||||| || ||||||| |||||| ||| | ||||||| ||| |||||||| || || || ||||||||||| ||||| ||||| ||| |||||||| |
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| T |
34919131 |
tgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaag |
34919230 |
T |
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| Q |
177 |
gaagaag |
183 |
Q |
| |
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||||||| |
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|
| T |
34919231 |
gaagaag |
34919237 |
T |
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