View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1768_low_2 (Length: 502)
Name: NF1768_low_2
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 37319551 - 37319845
Alignment:
| Q |
14 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatga |
113 |
Q |
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| T |
37319551 |
aacctgtgtgcaattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatga |
37319650 |
T |
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| Q |
114 |
aattctaaaaatagctatcctgattgatcaataatatgaatacagttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
213 |
Q |
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| T |
37319651 |
aattctaaaaatagcaatgctgattgatcaataatatgaatacggttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaa |
37319750 |
T |
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| Q |
214 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataatttttctaaaacacaccttgttgctcacttggactagtgtgttctagacagtg |
308 |
Q |
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| T |
37319751 |
agaaataaagtaaaagaaatcctgaagtaaaactcagaataaattttctaaaacaaacctagttgctcacttggactagtgtgttctagacagtg |
37319845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 308 - 435
Target Start/End: Original strand, 37319983 - 37320110
Alignment:
| Q |
308 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
407 |
Q |
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| T |
37319983 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
37320082 |
T |
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| Q |
408 |
agtctatgacattaacaaacaaaaacat |
435 |
Q |
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| T |
37320083 |
agtctatgacattaacaaacaaaaacat |
37320110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 37320171 - 37320224
Alignment:
| Q |
428 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320171 |
aaaaacatgacaagtacagactagtaaatcataacaacacaacaatcttaatta |
37320224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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