View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1768_low_3 (Length: 447)
Name: NF1768_low_3
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 7432497 - 7432059
Alignment:
| Q |
12 |
gagatgaagagaaaaaaggatcaataatttggaacaagaagcaaatctaataaaaatattagctatgaaaaaagattacatatgttacaattagttgaaa |
111 |
Q |
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| T |
7432497 |
gagaagaagagaaaaaaggttcaataatttggaacaagaagcaaatctaataaaaagattaactatgaaaaaagattacatatgttacacttagttgaaa |
7432398 |
T |
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| Q |
112 |
ataaaccaccaaccaattaaggtcaaacgaagtctaaatagtcgaatgattgtattagaacaccaacgaacgatagaaaaataaaataaaagaatatcgc |
211 |
Q |
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| T |
7432397 |
ataaaccaccaatcaattaaggtcaaatgaagtctaaatagtcgaatgattgtattagaacaccaacaaacgataaaaaaataaaataaaagaatatcgc |
7432298 |
T |
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| Q |
212 |
aagacacatagacacatactttgttcatgtagtttgacaaa---taatgcacacttttgcgactatagaacaactaaatctctaa-----tatttcttta |
303 |
Q |
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| T |
7432297 |
aagacacatagacacatact---ttcatgtagtttgacaaatagtaatgtacacttttgcgactataaaacaactaaatctctaatactgtatttctttt |
7432201 |
T |
|
| Q |
304 |
gatgaaatatggttacaatgttacgattagtatacgcaatactacaatccatattacaaacaatactcttgagctccttcttttgatgaattaagattta |
403 |
Q |
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||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7432200 |
gatgaaatagggctacagtgttacgattagtatacgcaatactacaatccagattacaaacaatactcttgagctccttcttttcatgaattaagattta |
7432101 |
T |
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| Q |
404 |
caatgttcgcaatggtacattgacttagctcactctctgcgt |
445 |
Q |
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| T |
7432100 |
caatgttcgcaatgatacattgacttagctcactctctgcgt |
7432059 |
T |
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