View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1768_low_5 (Length: 350)

Name: NF1768_low_5
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1768_low_5
NF1768_low_5
[»] chr4 (15 HSPs)
chr4 (6-294)||(36935686-36935975)
chr4 (179-298)||(35097881-35098000)
chr4 (179-298)||(35098170-35098289)
chr4 (179-293)||(35072682-35072796)
chr4 (180-298)||(36940478-36940596)
chr4 (178-293)||(35107064-35107179)
chr4 (179-290)||(36296455-36296566)
chr4 (165-298)||(36953624-36953762)
chr4 (297-335)||(35097818-35097856)
chr4 (297-335)||(35098107-35098145)
chr4 (297-335)||(36940621-36940659)
chr4 (297-335)||(35072826-35072864)
chr4 (297-335)||(35106996-35107034)
chr4 (297-333)||(36296599-36296635)
chr4 (182-258)||(36961469-36961545)
[»] chr6 (4 HSPs)
chr6 (178-293)||(24040737-24040852)
chr6 (179-290)||(24014181-24014292)
chr6 (297-335)||(24040882-24040920)
chr6 (299-335)||(24014327-24014363)
[»] chr5 (2 HSPs)
chr5 (235-298)||(34919157-34919220)
chr5 (198-298)||(26579156-26579256)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 36935686 - 36935975
Alignment:
Q  6 gaaaatttgtttcatagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattacaaaacacattacatgatttt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36935686 gaaaatttgtttcaaagataaaaataaactggaaaattggaatatgatatttactgcacataaaattttctcaaaattaaaaaacacattacatgatttt 36935785  T
Q  106 ccttcatacacacagtagacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935786 ccttcatacacacagtacacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatctaaccagagatatcaatggtcttcactt 36935885  T
Q  206 caggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc-gttgcagctttcacttgatccattttagcattctca 294  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  36935886 caggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgatccattttagcattctca 36935975  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 35098000 - 35097881
Alignment:
Q  179 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 278  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  279 cattttagcattctcaggca 298  Q
    |||||| |||||||||||||    
T  35097900 cattttcgcattctcaggca 35097881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 35098289 - 35098170
Alignment:
Q  179 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 278  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  279 cattttagcattctcaggca 298  Q
    |||||| |||||||||||||    
T  35098189 cattttcgcattctcaggca 35098170  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 35072682 - 35072796
Alignment:
Q  179 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 278  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  279 cattttagcattctc 293  Q
    |||||| ||||||||    
T  35072782 cattttcgcattctc 35072796  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 36940478 - 36940596
Alignment:
Q  180 accagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatcc 279  Q
    |||||||||||||||||| || |||||| | ||||| | ||||| ||| ||||| || ||||||||||  ||||||||| |||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  280 attttagcattctcaggca 298  Q
    |||||||||||||||||||    
T  36940578 attttagcattctcaggca 36940596  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 35107179 - 35107064
Alignment:
Q  178 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat 277  Q
    ||||||||||| |||||||  || |||||||||||||| | |||||| || || || || |||| |||||||||||||||| | ||||||||||||||||    
T  35107179 taaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgat 35107080  T
Q  278 ccattttagcattctc 293  Q
    ||||||| ||||||||    
T  35107079 ccattttcgcattctc 35107064  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 36296455 - 36296566
Alignment:
Q  179 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 278  Q
    |||||||||| ||||| | ||| || ||||| |||||||| ||||||||||| || || ||||||||||||||||||||| ||||||||||||| |||||    
T  36296455 aaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatc 36296554  T
Q  279 cattttagcatt 290  Q
    ||| || |||||    
T  36296555 catcttggcatt 36296566  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 36953624 - 36953762
Alignment:
Q  165 ctcgattagtatctaaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattc--------t 256  Q
    ||||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||| || || || |||  |||||||||||||        |    
T  36953624 ctcgattagtatc-aacctgggatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttaca--gagaacaccattctccatcagt 36953720  T
Q  257 ccgttgcagctttcacttgatccattttagcattctcaggca 298  Q
    || |||||||||||||||||||| |||||||||| |||||||    
T  36953721 ccattgcagctttcacttgatccgttttagcattgtcaggca 36953762  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35097856 - 35097818
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35097856 cactgctacgctccacacgatgccattgatcgttcttat 35097818  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35098145 - 35098107
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35098145 cactgctacgctccacacgatgccattgatcgttcttat 35098107  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 36940621 - 36940659
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36940621 cactgctacgctccacgggatgccattgatcgttcttat 36940659  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 35072826 - 35072864
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  35072826 cactgctacgctccacacgatgccattgatcattcttat 35072864  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 35107034 - 35106996
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  35107034 cactgctacgctccacacgatgccattgatcattcttat 35106996  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 36296599 - 36296635
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttctt 333  Q
    |||||||||||||||||||||||||||| | ||||||    
T  36296599 cactgctacgctccacgcgatgccattggttgttctt 36296635  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 36961545 - 36961469
Alignment:
Q  182 cagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc 258  Q
    ||||||||||||||||||| ||| |||| || || || ||||| || || |  || |||||||||||||||||||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcc 36961469  T

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Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 24040737 - 24040852
Alignment:
Q  178 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat 277  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| || || || || |||||||||| |||||||||| ||||||||||||||||||    
T  24040737 taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgat 24040836  T
Q  278 ccattttagcattctc 293  Q
    ||||||| ||||||||    
T  24040837 ccattttcgcattctc 24040852  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 24014181 - 24014292
Alignment:
Q  179 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 278  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  279 cattttagcatt 290  Q
    |||||| |||||    
T  24014281 cattttcgcatt 24014292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 24040882 - 24040920
Alignment:
Q  297 cactgctacgctccacgcgatgccattgatcgttcttat 335  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  24040882 cactgctacgctccacacgatgccattgatcattcttat 24040920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 24014327 - 24014363
Alignment:
Q  299 ctgctacgctccacgcgatgccattgatcgttcttat 335  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  24014327 ctgctgcgctccacacgatgccattgatcgttcttat 24014363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 34919220 - 34919157
Alignment:
Q  235 gtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggca 298  Q
    |||||||| ||||| ||||||||| |  ||||||| || |||||||||||| ||||||||||||    
T  34919220 gtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggca 34919157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 26579256 - 26579156
Alignment:
Q  198 cttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggc 297  Q
    |||||| |||||||||||||||||  | || || ||  ||||||| || |||||||||||| |  |||||||||| | |||||  ||||||||||| |||    
T  26579256 cttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggc 26579157  T
Q  298 a 298  Q
    |    
T  26579156 a 26579156  T

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