View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1768_low_6 (Length: 349)
Name: NF1768_low_6
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 29069103 - 29069325
Alignment:
| Q |
3 |
ggtggatattgtaatcctcctaagcagcattttgtgcttccggttgaagcttttgagaagattgctatttggaaaggagggttaatgcccgtgcattatc |
102 |
Q |
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| T |
29069103 |
ggtggatattgtaatcctcctaagcagcattttgtgcttccggttgaagcttttgagaagattgctatttggaaaggaggtaacatgcccgtgcattatc |
29069202 |
T |
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| Q |
103 |
gcaggtactctattctttcttctcctcttctgttagtttttcttcctaaatcatgaacattatgaatgaatctatatgcgtgacaacttgggatgagaat |
202 |
Q |
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| T |
29069203 |
gcaggtactctattctttcttctcctcttgtgttagtttttcttcctaaatcatgaacattatcaatgaatctatatgtgtgacaacttgggatgagaat |
29069302 |
T |
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| Q |
203 |
agaatgtgccgaactatgttttg |
225 |
Q |
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| T |
29069303 |
agaatgtgccgaactatattttg |
29069325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 29069327 - 29069402
Alignment:
| Q |
257 |
gcttaacccttctctatttnnnnnnntctgaacctgacatagatatgtcgtaggtcatgtaggccgacctgatttat |
333 |
Q |
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| T |
29069327 |
gcttaatccttctctatttaaaaatatctgaacct-acatagatatgtcgtaggtcatgtaggccgacctgacttat |
29069402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 32825846 - 32825770
Alignment:
| Q |
2 |
tggtggatattgtaatcctcctaagcagcattttgtgcttccggttgaagcttttgagaagattgctatttggaaag |
78 |
Q |
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||||||| |||||||||||||||| |||||||||| ||||| |||| |||||||||||||| ||||||||||||| |
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| T |
32825846 |
tggtggacattgtaatcctcctaataagcattttgttcttcctattgatgcttttgagaagatcgctatttggaaag |
32825770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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