View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1768_low_9 (Length: 284)
Name: NF1768_low_9
Description: NF1768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1768_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 4756922 - 4756639
Alignment:
| Q |
1 |
tgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaat |
100 |
Q |
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| T |
4756922 |
tgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaat |
4756823 |
T |
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| Q |
101 |
gagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgat |
200 |
Q |
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| T |
4756822 |
gagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgat |
4756723 |
T |
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| Q |
201 |
cttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctct |
284 |
Q |
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| T |
4756722 |
cttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctct |
4756639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 4749056 - 4748804
Alignment:
| Q |
29 |
ctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgcttcg |
128 |
Q |
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| T |
4749056 |
ctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---ttcg |
4748960 |
T |
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| Q |
129 |
tcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaat |
228 |
Q |
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| T |
4748959 |
tgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaag |
4748860 |
T |
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| Q |
229 |
gagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctct |
284 |
Q |
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| T |
4748859 |
cagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctct |
4748804 |
T |
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