View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17690_high_2 (Length: 354)
Name: NF17690_high_2
Description: NF17690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17690_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 42484337 - 42484011
Alignment:
| Q |
17 |
atgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcacattcttccatagataagata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42484337 |
atgatgtgtgttcccattcagagggaaggtgcgattgtgacagataaaattgaagtgtatatactaagtacgattttcacattcttccatagataagata |
42484238 |
T |
|
| Q |
117 |
tggtggaagatattctcaatcaaaaaggaggtggttggatgagatggtcaagagcatgacctattattatcatatattatggtccaataaaataaaattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42484237 |
tggtggaagatattctcaatcaaaaaggaggtggttggatgagatggtcaagagcatgacctattattatcatatattatggtccaataaaataaaattt |
42484138 |
T |
|
| Q |
217 |
atgatatgatactatatagcaatagcaaagacagaaattgatatgatgtggtccatagtctatactagcatatagattaatataaggtaagataacgaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42484137 |
atgatatgatactatatagcaatagcaaagacagaaattgatatgatgtggtccatagtctatactagcatatagattaatatgaggtaagataacgaaa |
42484038 |
T |
|
| Q |
317 |
caagtcaatatcttagttgctgttcat |
343 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42484037 |
caagtcaatatcttagttgctgttcat |
42484011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University