View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17690_low_1 (Length: 372)
Name: NF17690_low_1
Description: NF17690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17690_low_1 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 10374010 - 10374348
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374010 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
10374109 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374110 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
10374209 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374210 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
10374309 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10374310 |
ttttactttttgcaagtcttcactttgttttccccatat |
10374348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 10519399 - 10519051
Alignment:
| Q |
5 |
tgtcgaagaatatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaa |
104 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10519399 |
tgtcgaacattatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaa |
10519300 |
T |
|
| Q |
105 |
catctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagatacc |
204 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10519299 |
catctccataccacatatttctaggtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagatacc |
10519200 |
T |
|
| Q |
205 |
atgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
10519199 |
atgttataaaacgaagaacttcccaaccaactcggaaaacttgtcccaccatacaaacaaatattcaggctcttcaaatttattggtggttgcaacatat |
10519100 |
T |
|
| Q |
305 |
ccaacacaacttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
| | ||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10519099 |
cgagcacaactttcactttttgcgagtcgtcactttgttttccccatat |
10519051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 9851643 - 9851305
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9851643 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccaggccaattgtctccaacatctccata |
9851544 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851543 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
9851444 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||| | || ||||| |||||||| ||||||||||||||| | |||||| |
|
|
| T |
9851443 |
acgaagaacttcccaaccaactcggaaaacttgtcccaccatacaagtcaattttaagcaccttcagatttattggtggttgcaacatatcgagcacaac |
9851344 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| |||| |||||| |||||||| |||||||||||||| |
|
|
| T |
9851343 |
tttcacttcttgcgaatcttcactatgttttccccatat |
9851305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 9840765 - 9840427
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840765 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatctgggcataatagaactccgggccaattgtctccaacatctccata |
9840666 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9840665 |
ccacgtatttctacgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagatacgatgttataaa |
9840566 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||| | || ||||| |||||||| ||||||||||||||| | |||||| |
|
|
| T |
9840565 |
acgaagaacttcccaaccaactcggaaaacttgtcccaccatacaagtcaattttaagcaccttcagatttattggtggttgcaacatatcgagcacaac |
9840466 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| |||| |||||| |||||||| |||||||||||||| |
|
|
| T |
9840465 |
tttcacttcttgcgaatcttcactatgttttccccatat |
9840427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10033904 - 10033566
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10033904 |
tatacgctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccata |
10033805 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||| |||| | ||||||||||||||| ||| |
|
|
| T |
10033804 |
ccacgtatttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgaagagataccatgttagaaa |
10033705 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||||| ||||| | |||||| |
|
|
| T |
10033704 |
acaaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattcaggctctttagatttattggtggttgcaaaatatcgagcacaac |
10033605 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10033604 |
tttcactttttgcgactcttcactttgttttccccatat |
10033566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10128829 - 10128491
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128829 |
tatatgctcaagggatcggaatggttggaaggaagaattagatcctttttcaatctgggcataatagaactccgggccaattgtctccaacatctccata |
10128730 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||| |||| | ||||||||||||||| ||| |
|
|
| T |
10128729 |
ccacgtatttctatgtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgttagaaa |
10128630 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||||||||||| | |||||| |
|
|
| T |
10128629 |
acaaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattcaggctctttagatttattggtggttgcaacatatcgagcacaac |
10128530 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10128529 |
tttcactttttgcgactcttcactttgttttccccatat |
10128491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 10582508 - 10582176
Alignment:
| Q |
21 |
ctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgt |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
10582508 |
ctcaagggatggaaatggttggaaggaagaattagaaccttcttcaatctggacataatagaactccaggccaattgtctccaacatctccataccacat |
10582409 |
T |
|
| Q |
121 |
atttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaag |
220 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||| |||| | ||| |||||||||||| ||||||||| |
|
|
| T |
10582408 |
atttctaggtccttaagagaaggtaactgccctattggtggaagtgtcacacaatattcacaattagtgatgcggagggataccatgttagaaaacgaag |
10582309 |
T |
|
| Q |
221 |
aacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaacttttac |
320 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| || |
|
|
| T |
10582308 |
aatttcccaaccaactaggaaaacttgtcccgccatataagcaaatattcaggctcttcaaatttattgctggttgcaacatatcaagcacaactttcac |
10582209 |
T |
|
| Q |
321 |
tttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||| |
|
|
| T |
10582208 |
tttatgcgactcttcactttgttttccccatat |
10582176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10665430 - 10665092
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| | || ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10665430 |
tatacactcaagggatggaaatggttggaaggaagaacttgagccttcctcaatctggacataatagaactccgggccaattgtctccaacatctccatg |
10665331 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
| | |||||||| || ||||||||||||||||| ||| |||| ||||||| ||||||||| ||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
10665330 |
tcgcatatttctaggttcttgagagaaggtaacttcccaaggggtggaagtatcacacaatattcacaattactgatacagagggataccatgttagaaa |
10665231 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
10665230 |
acgaagaatttcccaaccaacttggaaagcttgttccaccatacaagaaaatattcaggctcttcaaatttattggtggttgcaacatatcgagtacaac |
10665131 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10665130 |
tttcactttttgcgaatcttcactttgttttccccatat |
10665092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10262602 - 10262264
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccat |
113 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
10262602 |
tatacgctcaagggattgaaatggttggaaggaagaacaagaaccttcttctc-cttggacataatagaactccggaccaattgtctccaacctcttcat |
10262504 |
T |
|
| Q |
114 |
accacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
213 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||| |||| | |||||||||||||||||| |
|
|
| T |
10262503 |
accacatatttctaggtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgttataa |
10262404 |
T |
|
| Q |
214 |
aacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaa |
313 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| | |||||||| ||||||||||||||| | ||||| |
|
|
| T |
10262403 |
aacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaaacaaattttcaggctctttagatttattggtggttgcaacatatcgagcacaa |
10262304 |
T |
|
| Q |
314 |
cttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10262303 |
ctttcactttttgcgactcttcactttgttttccccatat |
10262264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10090694 - 10090356
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||| ||| |||||||| || | |||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
10090694 |
tatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatgttcata |
10090595 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
10090594 |
ccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatattcacaattactgatacagagggataccatgttagaaa |
10090495 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| | |||||| |
|
|
| T |
10090494 |
acgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagctcttcagatttattggaggttgcaacatatcgagcacaac |
10090395 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10090394 |
tttcactttttgcgagtcttcactttgctttccccatat |
10090356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 10197577 - 10197239
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||| ||| |||||||| || | |||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
10197577 |
tatacgctcaagggttggaaatggctggaaggaagaacaagaaccttcttctccctggacataatagaactccggaccaattgtctccaacatgttcata |
10197478 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
10197477 |
ccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatattcacaattactgatacagagggataccatgttagaaa |
10197378 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| | |||||| |
|
|
| T |
10197377 |
acgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagctcttcagatttattggaggttgcaacatatcgagcacaac |
10197278 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10197277 |
tttcactttttgcgagtcttcactttgctttccccatat |
10197239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 10432209 - 10432547
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| || ||||| ||||||| | || |||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
10432209 |
tatacgctcaagggatggaaatggtaggaaggaagaattggagccttcatcaatctggacaaaatagaactctgtgccaattgtctccaacatcttcata |
10432308 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
10432309 |
ccacatatttgtaggtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacagagggataccatgtccgaaa |
10432408 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||| | | |||| ||||||||||||||||| |||||| |
|
|
| T |
10432409 |
acgaagaatttcccagccaactcggaaagcttgtaccatcatacaagcaaatatttaggctcttcatactcattggtggttgcaacatatccagcacaac |
10432508 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10432509 |
tttcactttgtgcgagtcttcactttgttttccccatat |
10432547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 10361970 - 10362301
Alignment:
| Q |
19 |
cgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccac |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || |||||||||| | |||||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
10361970 |
cgctcaagggatggaaatggttggaaggaagaattagaaccatcttcaatctggacataatagaactccaggccaattgtctccaacatgttcataccac |
10362069 |
T |
|
| Q |
119 |
gtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacga |
218 |
Q |
| |
|
||||| || | |||| ||||||||||||||||||| || ||||||| ||||||||| |||||||||| |||| | ||| |||||||||||| ||||||| |
|
|
| T |
10362070 |
atatttttaggaccttcagagaaggtaactgccctaagggtggaagtatcacacaatattcacaattagtgatgcggagggataccatgttagaaaacga |
10362169 |
T |
|
| Q |
219 |
agaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaactttt |
318 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
10362170 |
agaatttcccaaccaactaggaaaacttgtcccaccat---ggcaaatattcaggctcttcaaatttattggtggttgcaacatatcaagcacaactttc |
10362266 |
T |
|
| Q |
319 |
actttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10362267 |
actttttgcgactcttcactttgttttccccatat |
10362301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 10079310 - 10078976
Alignment:
| Q |
19 |
cgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccac |
118 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
10079310 |
cgctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaa |
10079211 |
T |
|
| Q |
119 |
gtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacga |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || | ||||||| ||||||||| |||||||| | |||| ||| ||||||| |||| ||||||| |
|
|
| T |
10079210 |
atatttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcacacaatattcacaatcagtgattacgagggataccaagttacaaaacga |
10079111 |
T |
|
| Q |
219 |
agaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaactttt |
318 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| | || ||||| |
|
|
| T |
10079110 |
agaatttcctaaccaactcgaaaagcttgtcccaccatacaagcaaatattcagactcttcaaatttattggtggttgcaacatatcgagcaatactttc |
10079011 |
T |
|
| Q |
319 |
actttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| |
|
|
| T |
10079010 |
actttttgtgaatcttcactttgctttccccatat |
10078976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 10186280 - 10185946
Alignment:
| Q |
19 |
cgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccac |
118 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
10186280 |
cgctcaagggatggaaatggttggaagaaagattcagagccttcttcaatctggacataatagaactccgggccaattgtctccaacatcttcattccaa |
10186181 |
T |
|
| Q |
119 |
gtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacga |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || | ||||||| || |||||| |||||||| | |||| ||| || |||| |||| ||||||| |
|
|
| T |
10186180 |
atatttctaggtccttgagagaaggtagttgcccaagtggtggaagtatcgcacaatattcacaatcagtgattacgagggacaccaagttacaaaacga |
10186081 |
T |
|
| Q |
219 |
agaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaactttt |
318 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| | || ||||| |
|
|
| T |
10186080 |
agaatttcctaaccaactcgaaaagcttgtcccaccatacaagcaaatattcagactcttcaaatttattggtggttgcaacatatctagcaatactttc |
10185981 |
T |
|
| Q |
319 |
actttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |
|
|
| T |
10185980 |
actttttgtgaatcttcactttgttttccccatat |
10185946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 11771138 - 11770797
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||| || ||| |||| || | |||||||||||| || | |||||| ||||| ||| |||| |
|
|
| T |
11771138 |
tataagctcgagggatggaaatggttggaaggaagaattggaacctacttctccctggacataatagaacttcgaacaaattgtatccaatatcatcata |
11771039 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||| ||| |||||||||||| ||| |
|
|
| T |
11771038 |
ccacatatttctagctccttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgttagaaa |
11770939 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||||| | |||| | |
|
|
| T |
11770938 |
atgaagaatttcccagccaactcggaaagcttgtcccaccatacaagcaaatattcaggctcttcagatttattggcggctgcagcatatcgagcacatc |
11770839 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatattag |
356 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
11770838 |
tttcactttttgcgactcgtcactttgttttccccatattag |
11770797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 11780147 - 11780488
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||| || ||| |||| || | |||||||||||| || | |||||| ||||||||| |||| |
|
|
| T |
11780147 |
tataagctcgagggatggaaatggttggaaggaagaattggaacctacttctccctggacataatagaacttcgaacaaattgtatccaacatcatcata |
11780246 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||| ||| ||||||||||| ||| |
|
|
| T |
11780247 |
ccacatatttctaactccttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgtttgaaa |
11780346 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
| |||| | |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||||| | |||||| |
|
|
| T |
11780347 |
atgaaggatttcccagccaacttggaaagcttgtcccaccatacaagcaaatattcaggctcttcagatttattggcggctgcagcatatcgagcacaac |
11780446 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttccccatattag |
356 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
11780447 |
tttcactttttgcgactcgtcactttgttttccccatattag |
11780488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 10530551 - 10530216
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccat |
113 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| || |||||| | |||||| || |||||||||| | ||||||| ||||||| |||| ||| |
|
|
| T |
10530551 |
tatacgctcaagggacggaaatggttggaaggaagaatttgaaccttctcct-tcttggacacaatagaactctgagccaattctctccaatatcttcat |
10530453 |
T |
|
| Q |
114 |
accacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
213 |
Q |
| |
|
| || ||||| || |||||| |||||||||| ||||||||| | ||||||||||| |||| |||||||||| ||| | ||||| |||||||||||| |
|
|
| T |
10530452 |
atcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcacaattatcgatgcgaagagacaccatgttataa |
10530353 |
T |
|
| Q |
214 |
aacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaa |
313 |
Q |
| |
|
||| |||| |||| | |||| | ||||| |||||||| |||||||||| |||||| |||||||||| | |||||| ||||||||||||||| | |||| |
|
|
| T |
10530352 |
aacaaagagtttccgacccaatttggaaaacttgtcccgccatacaagccaatatgaaggctcttcagagttattggtggttgcaacatatctagaacaa |
10530253 |
T |
|
| Q |
314 |
cttttactttttgcgagtcttcactttgttttcccca |
350 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
10530252 |
ctttcacttttcgcgagtcttcactttcttttcccca |
10530216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 10679342 - 10679007
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccat |
113 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||| || |||||| | |||||| || |||||||||| | ||||||| ||||| | |||| ||| |
|
|
| T |
10679342 |
tatacactcaagggacggaaatggttggaaggaagaatttgaaccttctcct-tcttggacacaatagaactctgagccaattctctccgatatcttcat |
10679244 |
T |
|
| Q |
114 |
accacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataa |
213 |
Q |
| |
|
| || ||||| || |||||| |||||||||| ||||||||| | ||||||||||| |||| |||| ||||| ||| | ||||| ||||||||||| |
|
|
| T |
10679243 |
atcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcagaattatcgatgcgaagagacaccatgttatag |
10679144 |
T |
|
| Q |
214 |
aacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaa |
313 |
Q |
| |
|
||| |||| |||| | |||| | ||||| |||||||| |||||||||| |||| | || ||||||| | |||||| ||||||||||||||| | |||| |
|
|
| T |
10679143 |
aacaaagagtttcctacccaatttggaaaacttgtcccgccatacaagccaatacgaagcctcttcagacttattggtggttgcaacatatctagaacaa |
10679044 |
T |
|
| Q |
314 |
cttttactttttgcgagtcttcactttgttttcccca |
350 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10679043 |
ctttcacttttcgcgagtcttcactttgttttcccca |
10679007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 10502487 - 10502244
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||| ||| |||||||| | | || |||||||||| ||||||||| ||||||| || |||| |
|
|
| T |
10502487 |
tatacactcaagggagggaaatggttggaaggaagaatcagaaccttcttctac---gacacaatagaactctgggccaattttctccaatattaacata |
10502391 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
| ||| || ||| ||||||||||||| ||||||| | ||||||||||||||||| |||||| ||| |||| ||| |||||||||||| ||| |
|
|
| T |
10502390 |
taccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcacacaatattcacagttagtgatgttgatggataccatgttagaaa |
10502291 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaag |
261 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
10502290 |
acgaagaatttcccaaccaatttggaaagcttgtcccgctatacaag |
10502244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 13172821 - 13172688
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||||| ||||| | || ||||||||| |||| ||| | ||| |
|
|
| T |
13172821 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
13172722 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaagc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13172721 |
aaccaactcggaaagcttgtcccaccatacaagc |
13172688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 261
Target Start/End: Original strand, 11147082 - 11147265
Alignment:
| Q |
78 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattt |
177 |
Q |
| |
|
||||||||| || |||||||||||||| || | |||||| | ||| || |||||||||||||| || || ||||| | ||||||||||||||||| | |
|
|
| T |
11147082 |
atagaactctggaccaattgtctccaatatatacatacctcttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatat |
11147181 |
T |
|
| Q |
178 |
tcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaag |
261 |
Q |
| |
|
|||||| || || || ||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11147182 |
ccacaatgttgaattgacagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcccaccatacaag |
11147265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 13334697 - 13334566
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| ||||||| ||||||||| ||||| | || ||||||||| ||||| ||| | ||| |
|
|
| T |
13334697 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13334598 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaa |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
13334597 |
aaccaactcggaaagcttgttccaccatacaa |
13334566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 13345876 - 13345745
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| ||||||| ||||||||| ||||| | || ||||||||| ||||| | | | ||| |
|
|
| T |
13345876 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaatggatcaccc |
13345777 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13345776 |
aaccaactcggaaagcttgtcccaccatacaa |
13345745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 11158369 - 11158428
Alignment:
| Q |
202 |
accatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaag |
261 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11158369 |
accatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcccaccatacaag |
11158428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 13162773 - 13162642
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| ||||||| ||||||||| ||||| | || ||||||||| ||||| ||| | ||| |
|
|
| T |
13162773 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13162674 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaa |
260 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |
|
|
| T |
13162673 |
aaccaactcgggaagcttgttccaccatacaa |
13162642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 261
Target Start/End: Complemental strand, 8863127 - 8862944
Alignment:
| Q |
78 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattt |
177 |
Q |
| |
|
||||||||| || |||||||||||||| || |||||| ||| | || |||||| ||||||| || || ||||| | ||||||||||||||||| | |
|
|
| T |
8863127 |
atagaactctggaccaattgtctccaatattgacatacctgttatctttaggtcctttagagaagatagttgtcctagtggtggaagtgtcacacaatat |
8863028 |
T |
|
| Q |
178 |
tcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaag |
261 |
Q |
| |
|
||||||| || | || || ||||||||| |||| |||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
8863027 |
ccacaattttcaatgcacagtgacaccatgttagaaaatgaagaatctcccaaccaacatggaaagcttgtcccaccgtacaag |
8862944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 10891147 - 10890966
Alignment:
| Q |
78 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattt |
177 |
Q |
| |
|
||||||||| || |||||||||||||| || |||||| | ||| || |||||||||||||| || | ||||| | ||||||||||||||||| | |
|
|
| T |
10891147 |
atagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatagtcgtcctagtggtggaagtgtcacacaatat |
10891048 |
T |
|
| Q |
178 |
tcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccataca |
259 |
Q |
| |
|
||||||| || | || || ||||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10891047 |
ccacaattttcaatgcacagtgacaccatgttagaaaatgaagaatctcctaaccaacatggaaagcttgtcccaccataca |
10890966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 11129257 - 11129445
Alignment:
| Q |
78 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattt |
177 |
Q |
| |
|
||||||||| || |||||||||||||| || |||||| | ||| || |||||||||||||| || || ||||| | ||||||||||||||||| | |
|
|
| T |
11129257 |
atagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacacaatat |
11129356 |
T |
|
| Q |
178 |
tcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaat |
266 |
Q |
| |
|
|||||| || | || || ||||||||| |||| |||||| |||||||||||| ||||| |||||||| ||||| ||| |||| |
|
|
| T |
11129357 |
cgacaattttctatgcaaagtgacaccatgttagaaaatgaagaatctcccaaccaactaggaaaacttgtcccgccataaaagtaaat |
11129445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 55773 - 56105
Alignment:
| Q |
21 |
ctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgt |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55773 |
ctcaagggataggaatggttggaaggaagaattagatccttattcaatctgggcataatagaactccgggccaattgtctccaacatctccataccacat |
55872 |
T |
|
| Q |
121 |
atttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaag |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55873 |
atttctaagtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaatgaag |
55972 |
T |
|
| Q |
221 |
aacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaacttttac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||| | ||||||||| || |
|
|
| T |
55973 |
aacttcccaaccaactcggaaagcttgtcccaccatacaaacaaatattcaagctcttcaaatttattggtggttgcaacatatcgagcacaactttcac |
56072 |
T |
|
| Q |
321 |
tttttgcgagtcttcactttgttttccccatat |
353 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
56073 |
tttttgcgagtcttcactttgatttccccatat |
56105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 26908792 - 26908457
Alignment:
| Q |
15 |
tatacgctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccata |
114 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||| || ||||| ||||||| | |||||||| | || |||||||||||||||||||| | |||| |
|
|
| T |
26908792 |
tatacgctcaagggattgaaatggttggaaggaaaaattggagccttcctcaatctggacataatagtaatctgggccaattgtctccaacattttcata |
26908693 |
T |
|
| Q |
115 |
ccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaa |
214 |
Q |
| |
|
||| ||||||||| |||||||||| |||||| || ||||||| ||||||||| ||| |||||||||| | || || || ||||| ||| ||| |
|
|
| T |
26908692 |
ccatgtatttctaggtccttgagaaaaggtagttgtcctaggggtggaagtgttgggcaaaattcacaattagttatgtgaagggacaccatcttagaaa |
26908593 |
T |
|
| Q |
215 |
acgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaac |
314 |
Q |
| |
|
| ||||| ||||||||||||||| || |||||||||||||||||| ||| | ||||||||||| |||||||| ||| ||||||||||| | ||||| |
|
|
| T |
26908592 |
atgaagagtctcccaaccaactcgggaaacttgtcccaccatacaagtcaattttcaggctcttcagatttattggtggatgcaacatatcaagcacaaa |
26908493 |
T |
|
| Q |
315 |
ttttactttttgcgagtcttcactttgttttcccca |
350 |
Q |
| |
|
||| |||| | | || |||||||||||||||||||| |
|
|
| T |
26908492 |
tttcacttgtagtgaatcttcactttgttttcccca |
26908457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 44955847 - 44956179
Alignment:
| Q |
20 |
gctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttgg-cataatagaactccgggccaattgtctccaacatctccataccac |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || |||||| | ||||| |||| |||||||||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
44955847 |
gctcaagggacgggaatggttggaaggaggaattggaaccttctcctg-cttggacatagtagaactccgggcctattatctccaacttcttcataccat |
44955945 |
T |
|
| Q |
119 |
gtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacga |
218 |
Q |
| |
|
|||||||| ||||||||| |||| | ||||| || | ||||||||| ||||||| | ||||||||||| | || || |||||||| ||||||| |
|
|
| T |
44955946 |
atatttctagatccttgagaaaaggcagttgccccagcggtggaagtgttacacaataccctcaattactgatgcaaagggacgccatgttagaaaacga |
44956045 |
T |
|
| Q |
219 |
agaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaactttt |
318 |
Q |
| |
|
| || |||||||||| | |||||||||||||||||||| ||| ||| | || ||||||| || |||| ||||||||||||||| | ||| ||||| |
|
|
| T |
44956046 |
aaaatctcccaaccaatttggaaagcttgtcccaccatagaagtcaatttttagactcttcaggttcattggtggttgcaacatatcaagcacgactttc |
44956145 |
T |
|
| Q |
319 |
actttttgcgagtcttcactttgttttccccata |
352 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |
|
|
| T |
44956146 |
acttttagcgagtcttcactatgttttccccata |
44956179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 351
Target Start/End: Complemental strand, 11486932 - 11486603
Alignment:
| Q |
22 |
tcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgta |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| | | |||| || |||||||||| |||||||||||||||||||| |||| | || |
|
|
| T |
11486932 |
tcaagggatgaaaatggttggaaggaagaattagaagcttttccttccttgacacaatagaactcttggccaattgtctccaacatcaacatattcctta |
11486833 |
T |
|
| Q |
122 |
tttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaaga |
221 |
Q |
| |
|
| | | ||||||||| |||| |||||||| | ||||||||||| |||| |||||||| | |||| || || ||||| ||| |||| ||||| |
|
|
| T |
11486832 |
tactcagtttcttgagagatggtagttgccctagcggtggaagtgtcatgcaatattcacaatcattgatgtaaagggacaccattttagaaaatgaaga |
11486733 |
T |
|
| Q |
222 |
acttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctcttcaaatttattgctggttgcaacatatccaacacaacttttact |
321 |
Q |
| |
|
| ||||||||| ||||||| |||||||||||||||||| ||| ||| | |||| | ||||||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
11486732 |
atcacccaaccaattcggaaaacttgtcccaccatacaagtcaatgctcagtcccttcgagtttattggtggatgcaacatatcaagcacaactttcact |
11486633 |
T |
|
| Q |
322 |
ttttgcgagtcttcactttgttttccccat |
351 |
Q |
| |
|
||| |||||||||||||| |||||||||| |
|
|
| T |
11486632 |
tttagcgagtcttcacttaattttccccat |
11486603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 17851097 - 17851333
Alignment:
| Q |
21 |
ctcaagggatgggaatggttggaaggaagaattagatccttcttcaatcttggcataatagaactccgggccaattgtctccaacatctccataccacgt |
120 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| || |||||| | || | ||| ||||||||| || || ||| ||||||| ||||||||||||| |
|
|
| T |
17851097 |
ctcaagggacggaaatggttgaaaggaagaattggaaccttctcctgcctggacatgatagaactctggaccgattctctccaatatctccataccacaa |
17851196 |
T |
|
| Q |
121 |
atttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaag |
220 |
Q |
| |
|
||| || |||||| |||||||||| |||||| || | ||||||||||| |||| ||||| ||||||||| | | | || |||||| ||||||||| |
|
|
| T |
17851197 |
attagtaggtccttcagagaaggtagctgccccagcggtggaagtgtcatgcaatgttcaccattactgatgcccaagaacacgatgttagaaaacgaag |
17851296 |
T |
|
| Q |
221 |
aacttcccaaccaactcggaaagcttgtcccaccata |
257 |
Q |
| |
|
|| ||| | |||||| ||||| |||||||||||||| |
|
|
| T |
17851297 |
aatctcctagccaacttggaaaacttgtcccaccata |
17851333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 305
Target Start/End: Complemental strand, 29838481 - 29838254
Alignment:
| Q |
78 |
atagaactccgggccaattgtctccaacatctccataccacgtatttctatgtccttgagagaaggtaactgccctagggatggaagtgtcacacaattt |
177 |
Q |
| |
|
||||||||| |||||||| |||| ||||||| ||||||| || || |||||||||||||| || |||||||| ||||||||||| | |||| | |
|
|
| T |
29838481 |
atagaactctgggccaatagtcttcaacatcctcataccatctaaccttaggtccttgagagaagatagatgccctagtgatggaagtgtaaggcaatat |
29838382 |
T |
|
| Q |
178 |
tcacaattactgatactgagagataccatgttataaaacgaagaacttcccaaccaactcggaaagcttgtcccaccatacaagcaaatatgcaggctct |
277 |
Q |
| |
|
|||||||||||||| || || | ||||||||| | || |||||| |||||||||||| ||||||||| | || ||||| ||| |||| ||| ||| |
|
|
| T |
29838381 |
tcacaattactgatgctaaggtacaccatgttaaagaatgaagaatctcccaaccaacttggaaagctttttccgccatagtagccaatactcagtttct |
29838282 |
T |
|
| Q |
278 |
tcaaatttattgctggttgcaacatatc |
305 |
Q |
| |
|
|||| ||||||| |||| |||||||||| |
|
|
| T |
29838281 |
tcaagtttattgatggtcgcaacatatc |
29838254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 134167 - 134300
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||||| ||||| | || ||||||||| |||| ||| | ||| |
|
|
| T |
134167 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
134266 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaagc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
134267 |
aaccaactcggaaagcttgtcccaccatacaagc |
134300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 144215 - 144346
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| ||||||| ||||||||| ||||| | || ||||||||| ||||| ||| | ||| |
|
|
| T |
144215 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
144314 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaa |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
144315 |
aaccaactcggaaagcttgttccaccatacaa |
144346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 152520 - 152651
Alignment:
| Q |
129 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
228 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||| ||||||| ||||||||| ||||| | || ||||||||| ||||| ||| | ||| |
|
|
| T |
152520 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
152619 |
T |
|
| Q |
229 |
aaccaactcggaaagcttgtcccaccatacaa |
260 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |
|
|
| T |
152620 |
aaccaactcgggaagcttgttccaccatacaa |
152651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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