View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17690_low_3 (Length: 238)
Name: NF17690_low_3
Description: NF17690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17690_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 31340466 - 31340670
Alignment:
| Q |
15 |
cagagagcagaagagccttctcctttggcttaaattgtggatctgttgctccttccttagtagaaagattaagcttcaaatccacagtgtttgtttcact |
114 |
Q |
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| T |
31340466 |
cagagagcagaagagccttctcctttggcttaaattgtggatctgttgctccttccttagtagaaagattaagcttcaaatccacagtgtttgtttcact |
31340565 |
T |
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| Q |
115 |
ttcactctcagtttcagaaaaacctctcttccttactacttctgttgttttcccaggcaatccaagtcctaaccgcagttcagtttcctcaaacaccatc |
214 |
Q |
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| T |
31340566 |
ttcactctcagtttcagaaaaacctctcttccttactacttctgttgttttccctggcaatccaagtcctaacctcagttcagtttcatcaaacaccatc |
31340665 |
T |
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| Q |
215 |
ttttc |
219 |
Q |
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||||| |
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| T |
31340666 |
ttttc |
31340670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 38527317 - 38527233
Alignment:
| Q |
66 |
cttccttagtagaaagattaagcttcaaatccacagtgtttgtttcactttcactctcagtttcagaaaaacctctcttccttac |
150 |
Q |
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||||||||| |||||||||||| ||||||||| ||| |||| ||| ||| | ||||| |||||||| |||||||||||||| |
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| T |
38527317 |
cttccttagaggaaagattaagcatcaaatccatagtagttgtatcatcatcagtttcagtctcagaaaatcctctcttccttac |
38527233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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