View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17690_low_4 (Length: 229)
Name: NF17690_low_4
Description: NF17690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17690_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 31241637 - 31241425
Alignment:
| Q |
1 |
aaagtcacaatgaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcattcttctgaatccaatatgtaaat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31241637 |
aaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaatatgtaaat |
31241538 |
T |
|
| Q |
101 |
ttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaagattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31241537 |
ttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactaaagattca |
31241438 |
T |
|
| Q |
201 |
catttgtagtatt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31241437 |
catttgtagtatt |
31241425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 31232667 - 31232457
Alignment:
| Q |
1 |
aaagtcacaatgaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcattcttctgaatccaatatgtaaat |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31232667 |
aaagtcacaataaagcatgcaatgacttgtgacatggggagcaagatctatagataccgtggacctcaatttatcatacttctgaatccaatatgaaaat |
31232568 |
T |
|
| Q |
101 |
ttatcaaagctaatatcaatggacaagaattttccagcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaagattca |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
31232567 |
taataaaagctaatatcaatggacaagaattttccagcagagagtacttgaaccaaatgaataaggtaca--atattaaccatctactactcaagactca |
31232470 |
T |
|
| Q |
201 |
catttgtagtatt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31232469 |
catttgtagtatt |
31232457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University