View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17691_high_2 (Length: 345)

Name: NF17691_high_2
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17691_high_2
NF17691_high_2
[»] chr2 (1 HSPs)
chr2 (20-337)||(37040980-37041308)
[»] chr1 (4 HSPs)
chr1 (229-294)||(13138768-13138833)
chr1 (229-294)||(24557468-24557533)
chr1 (32-66)||(13139854-13139888)
chr1 (32-66)||(24558554-24558588)
[»] chr8 (2 HSPs)
chr8 (229-276)||(13141786-13141833)
chr8 (32-66)||(13142636-13142670)
[»] chr7 (2 HSPs)
chr7 (230-307)||(34239495-34239571)
chr7 (233-300)||(14244125-14244193)
[»] chr3 (1 HSPs)
chr3 (228-265)||(12488509-12488546)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 37041308 - 37040980
Alignment:
Q  20 aaacactctcccaaaggtgatctaactcagaaagatgcatatgctttcnnnnnnncatcattttcccaagttaagtgggctaagctcatatgaattttat 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  37041308 aaacactctcccaaaggtgatctaactcagaaagatgcgtatgctttcaaaaaatcatcattttcccaagttaagtgggctaagctcatatgaattttat 37041209  T
Q  120 tatctcacacatatttagggagggaaaccaatgt-----------gactaatttaagtttatcttgtaatcttccatcaattttgatgcaaattcccagc 208  Q
    ||||||||||||||||||||||||||||||||||           |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37041208 tatctcacacatatttagggagggaaaccaatgtacagatcacttggttaatttaagtttatcttgtaatcttccatcaattttgatgcaaattcccagc 37041109  T
Q  209 agcctaacttcnnnnnnngttcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccctcctttgttttgtt 308  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  37041108 agcctaacttctttttttgttcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggaggtttggtctagccccctcctttgttttgtt 37041009  T
Q  309 ctttgctttttgttataatatattcttgg 337  Q
    |||||||||||||||||||||||| ||||    
T  37041008 ctttgctttttgttataatatatttttgg 37040980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 13138833 - 13138768
Alignment:
Q  229 tcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccc 294  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||    
T  13138833 tcaaaacaagttagggatgcctaactttaggtttgttacccattaaggaggtttggtttggccccc 13138768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 24557533 - 24557468
Alignment:
Q  229 tcaaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccc 294  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||    
T  24557533 tcaaaacaagttagggatgcctaactttaggtttgttacccattaaggaggtttggtttggccccc 24557468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 13139888 - 13139854
Alignment:
Q  32 aaaggtgatctaactcagaaagatgcatatgcttt 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  13139888 aaaggtgacctaactcagaaagatgcatatgcttt 13139854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 24558588 - 24558554
Alignment:
Q  32 aaaggtgatctaactcagaaagatgcatatgcttt 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  24558588 aaaggtgacctaactcagaaagatgcatatgcttt 24558554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 13141833 - 13141786
Alignment:
Q  229 tcaaaacaagttagggatgcctaactttaggtttgttgctcattaagg 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13141833 tcaaaacaagttagggatgcctaactttaggtttgttactcattaagg 13141786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 13142670 - 13142636
Alignment:
Q  32 aaaggtgatctaactcagaaagatgcatatgcttt 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  13142670 aaaggtgacctaactcagaaagatgcatatgcttt 13142636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 34239571 - 34239495
Alignment:
Q  230 caaaacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggccccctcctttgttttgt 307  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||| | | |||||||||| ||||||    
T  34239571 caaaacaagttaggtatgtctaactttaggtttgttactcattaaggaggtttggt-ttgacccctcctttattttgt 34239495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 14244193 - 14244125
Alignment:
Q  233 aacaagttagggatgcctaactttaggtttgttgctcattaaggtggtttggtctggcc-ccctccttt 300  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||| ||||| |||||||||    
T  14244193 aacaagttagagatgcttaactttaggtttgttactcattaaggaggtttggtttggccaccctccttt 14244125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 12488509 - 12488546
Alignment:
Q  228 ttcaaaacaagttagggatgcctaactttaggtttgtt 265  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  12488509 ttcaaaacaagttaggaatgcctaactataggtttgtt 12488546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University