View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17691_high_5 (Length: 303)
Name: NF17691_high_5
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17691_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2945505 - 2945797
Alignment:
| Q |
1 |
ctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945505 |
ctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaagaatcaccgggaacttcctcaatcttctggatgataaacttacag |
2945604 |
T |
|
| Q |
101 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2945605 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggttctgttgtct |
2945704 |
T |
|
| Q |
201 |
catggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945705 |
catggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
2945797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 2928864 - 2929156
Alignment:
| Q |
1 |
ctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| | |||| |||||| ||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
2928864 |
ctcacgcaaaataccctcggatattgcttcagagaaacttgtagcacatctcaatgcatcaccaggaacttcctccatcttctggatgataaacttgcag |
2928963 |
T |
|
| Q |
101 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2928964 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccctgatgacaatgacaaactatagcttacattgatcggctctgttgtct |
2929063 |
T |
|
| Q |
201 |
catggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
293 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| || || ||| ||||||||||||||||||| |
|
|
| T |
2929064 |
catggaaactcgagttgataagactttgaacagcttcatgtctcttctttggttccattttcgggaaagcacaagcaagaaaaccaagaataa |
2929156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 3013918 - 3013626
Alignment:
| Q |
1 |
ctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacag |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| | || |||||||||||||||||||| || |
|
|
| T |
3013918 |
ctcacgcaaaataccctcggatattgcttcagagaaatttgtagcatacttcaatgaatcaccaagaactccatccatcttctggatgataaacttgcaa |
3013819 |
T |
|
| Q |
101 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3013818 |
ctttgactttcccaacgtacccttttgtttgatttcttggtaatgatgtcccctgatgataatgataaactatagcttacattgattggctctgttgtct |
3013719 |
T |
|
| Q |
201 |
catggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
293 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
3013718 |
catggaaactcaagttgataagactttgaacagcttcttgtctcctttttggttccattttcaggctagaacatgcaagaaaaccaagaataa |
3013626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 291
Target Start/End: Original strand, 37794311 - 37794523
Alignment:
| Q |
79 |
cttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagctt |
178 |
Q |
| |
|
||||||||||| |||||| | ||||| |||||||| |||||| |||||| |||||||||||||||| ||||| ||||| | ||||| | |||||||| |
|
|
| T |
37794311 |
cttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcccctgatgacagtgatagattatagctt |
37794410 |
T |
|
| Q |
179 |
acattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaa |
278 |
Q |
| |
|
|| ||| ||| | |||||||| |||||||| ||||| ||||| ||||||||||||||| ||||| | ||||| ||| |||||| ||| ||| |||| |
|
|
| T |
37794411 |
accgtgaccgggacctttgtctcaaggaaactcaggttgagaagaccttgaacagcttcatgcctcttgtctggttccatcttcaggctagaacaagcaa |
37794510 |
T |
|
| Q |
279 |
gaaaaccaagaat |
291 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
37794511 |
ggaaaccaagaat |
37794523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 2919438 - 2919541
Alignment:
| Q |
77 |
atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc |
176 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||| |||||| |||||| | |||||||||||||||| ||||| ||||| | || |||||||| | |
|
|
| T |
2919438 |
atcttctggatgaagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcccctgatgacagcgacaaactataac |
2919537 |
T |
|
| Q |
177 |
ttac |
180 |
Q |
| |
|
|||| |
|
|
| T |
2919538 |
ttac |
2919541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 2941950 - 2941982
Alignment:
| Q |
101 |
ctttgactttcccaacgtacccttttgtttgct |
133 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
2941950 |
ctttgactttccaaacgtacccttttgtttgct |
2941982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4917599 - 4917307
Alignment:
| Q |
1 |
ctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacag |
100 |
Q |
| |
|
|||| |||||| |||||| |||||||||||||| |||| ||||||||| ||||| | ||| | ||| || | || ||||| ||||| |||||||| ||| |
|
|
| T |
4917599 |
ctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttcaatatttcatcaggagctccatccatcttttggattataaacttgcag |
4917500 |
T |
|
| Q |
101 |
ctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtct |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4917499 |
ctttgactctcccaacgcacccttttgttggctttcttggtaatgattttccctgatgataatgataaactatagcttacattgattggctcctttgtct |
4917400 |
T |
|
| Q |
201 |
catggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
293 |
Q |
| |
|
|||| ||||| |||||| || | |||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
4917399 |
catgaaaacttaagttgagaaaattttgaacagcttcatgtctcttttttggttccatttcaaggctagaacatgcaagaaaaccaagaataa |
4917307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 1508240 - 1507959
Alignment:
| Q |
6 |
gcaaaataccctcggatattgcttcagagaaatttgtagcataattcaaaaaatcaccgggaacttcctcaatcttctggatgataaacttacagctttg |
105 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |||| ||||| |||| | || | || |||||||||||||||||||| | ||||| |
|
|
| T |
1508240 |
gcaaaacaccctcagatattgcttcagagaaatttgtaacatatttcaatgaatcctc----ac--catccatcttctggatgataaacttggaactttg |
1508147 |
T |
|
| Q |
106 |
actttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagcttacattgatcggctctgttgtctcatgg |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || || ||||||| || | |||||||||||||||||| || || ||||||||||| |
|
|
| T |
1508146 |
actttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagactatagcttacattgattggttccattgtctcatgg |
1508047 |
T |
|
| Q |
206 |
aaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaagaaaaccaagaataa |
293 |
Q |
| |
|
|| || |||||| |||| |||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
1508046 |
aagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttagaacatgcaagaaaaccaagaataa |
1507959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 291
Target Start/End: Original strand, 28023324 - 28023536
Alignment:
| Q |
79 |
cttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagctt |
178 |
Q |
| |
|
||||||||||| |||||| | ||||| |||||||| || ||| |||||| |||||||||||| ||| ||||| ||||| | | ||| ||||||||| |
|
|
| T |
28023324 |
cttctggatgaaaaacttggaactttgcctttcccagcgaaccattttgtcatctttctttgtaacgatgtcccctgatgacagtaatagactatagcta |
28023423 |
T |
|
| Q |
179 |
acattgatcggctctgttgtctcatggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgcaa |
278 |
Q |
| |
|
|| ||| ||| | ||| |||| |||| ||| ||||| ||||| ||||||||||||||| ||||| | ||||| ||| |||||| ||| ||| |||| |
|
|
| T |
28023424 |
accgtgaccgggacctttgcctcaaggaagctcatgttgagaagaccttgaacagcttcatgcctcttgtctggttccatcttcaggctagaacaagcaa |
28023523 |
T |
|
| Q |
279 |
gaaaaccaagaat |
291 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
28023524 |
ggaaaccaagaat |
28023536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University