View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17691_high_8 (Length: 240)
Name: NF17691_high_8
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17691_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2945473 - 2945249
Alignment:
| Q |
1 |
taatcactttgggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcct |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945473 |
taatcacattgggttatgtgatgaaattcaagaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagttcct |
2945374 |
T |
|
| Q |
101 |
cagttctgtgttcccttctggctaagt---ctattgccattgcttacttgtcgtttttatttgaatatgtttttgagttgtacttttgtttccctatcaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945373 |
cagttctgtgttcccttctggctaagtttattattgccattgcttacttgtcgtttttatttgaatatgtttttgagttgtacttttgtttccctatcaa |
2945274 |
T |
|
| Q |
198 |
taaatgtgatcatgtttagactctt |
222 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2945273 |
taaatgtgatcatgtttagactctt |
2945249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3013950 - 3014098
Alignment:
| Q |
1 |
taatcactttgggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcct |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||| | || ||||||||||| || |
|
|
| T |
3013950 |
taatcacattgggttttgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttct |
3014049 |
T |
|
| Q |
101 |
cagttctgtgttcccttctggctaagtc-tattgccattgcttacttgt |
148 |
Q |
| |
|
|||||||| ||||||| || |||| || ||||| || ||||||||||| |
|
|
| T |
3014050 |
cagttctgccttcccttttgactaactcttattggcactgcttacttgt |
3014098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 2928811 - 2928683
Alignment:
| Q |
22 |
tgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcctcagttctgtgttcccttctgg |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||||| | |||||||| | || |||||||||||||||||||||| ||||||| || |
|
|
| T |
2928811 |
tgaaatttaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctcagttctgccttcccttttga |
2928712 |
T |
|
| Q |
122 |
ctaagtcta--ttgccattgcttacttgt |
148 |
Q |
| |
|
||||||||| |||||| ||||||||||| |
|
|
| T |
2928711 |
ctaagtctatcttgccactgcttacttgt |
2928683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 2919328 - 2919204
Alignment:
| Q |
3 |
atcactttgggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcctca |
102 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||| ||||| ||||||||||| || |||||||| |||||| || |||||| ||||||||| |
|
|
| T |
2919328 |
atcacattgggttttatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagttcctca |
2919229 |
T |
|
| Q |
103 |
gttctgtgttcccttctggctaagt |
127 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
2919228 |
gttcttccttcccttctgactaagt |
2919204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 37794199 - 37794141
Alignment:
| Q |
3 |
atcactttgggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatc |
61 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
37794199 |
atcacattgggttttgtgctgaaattcaagaatgaagatattgaatttctgatggaatc |
37794141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 2913235 - 2913139
Alignment:
| Q |
12 |
ggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcctcagttctg |
108 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||| ||||| ||| | || |||||||| |||||| ||| |||||||||||||| ||||||| |
|
|
| T |
2913235 |
ggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctg |
2913139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 4917652 - 4917747
Alignment:
| Q |
22 |
tgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcctcagttctgtgttccctt |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||| |||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
4917652 |
tgaaatttaagaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctcagttctgctttccctt |
4917747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 1508298 - 1508405
Alignment:
| Q |
22 |
tgaaattcaagaatgaagaaattgattttctcatggaatcaaagaatttgcagattgaacatgcagatgaggagttcctcagttctgtgttcccttctgg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||| || || |||| || | || |||||| ||||||||||||||| ||||||||| |
|
|
| T |
1508298 |
tgaaattcaagaatgaagaaattgattttcttatggaatccaagtatctggagatcgaccctgaggatgagaagttcctcagttctgccttcccttctaa |
1508397 |
T |
|
| Q |
122 |
ctaagtct |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
1508398 |
ctaagtct |
1508405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 28023212 - 28023154
Alignment:
| Q |
3 |
atcactttgggttttgtgatgaaattcaagaatgaagaaattgattttctcatggaatc |
61 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||| || || |||||||| |
|
|
| T |
28023212 |
atcacattgggttttgtgctgaaattcaagaatgaagatattgaattcctgatggaatc |
28023154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University