View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17691_low_11 (Length: 202)
Name: NF17691_low_11
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17691_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 2049007 - 2048852
Alignment:
| Q |
9 |
aaactgagaaatgttttgaagtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaatatttaaatnnnnnn |
108 |
Q |
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| T |
2049007 |
aaactgagaatagttttgaagtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaatatttaaat---aaa |
2048911 |
T |
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| Q |
109 |
nnnnnngtgttactatttgttaacggcaag-aaaaaatataaggagttgtaatctaaaa |
166 |
Q |
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| T |
2048910 |
aaaaaagtgttactatttgttaacagcgagaaaaaaatacaaggagttgtaatctaaaa |
2048852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 2063102 - 2063014
Alignment:
| Q |
5 |
taggaaactgagaaatgttttgaagtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaa |
93 |
Q |
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| T |
2063102 |
taggaaactaagaaaagtcttgacgtctaaccacgaagatagatagcccggtttgcttgagcattaacttcagtgttatattccttaaa |
2063014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 2055092 - 2055026
Alignment:
| Q |
27 |
aagtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaa |
93 |
Q |
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| T |
2055092 |
aagtctaacctcgaagattgatagcccggtttgcttgagcatcagctccagtgttaaattccttaaa |
2055026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 2088953 - 2088872
Alignment:
| Q |
12 |
ctgagaaatgttttgaagtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaa |
93 |
Q |
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| T |
2088953 |
ctgagaaaagtcttgaggtctcacctccgagatagacggcctggtttgcttgagcatcagcttcagtgttaagttccttaaa |
2088872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 2099109 - 2099056
Alignment:
| Q |
29 |
gtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgtta |
82 |
Q |
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| T |
2099109 |
gtctaacctccgagaaagatggcccgatttgcttgagcatcagcttcagtgtta |
2099056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 2042466 - 2042402
Alignment:
| Q |
29 |
gtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaa |
93 |
Q |
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| T |
2042466 |
gtctaacctcggagattgatagcccgatttgcttgagcatcagcctcaatgttaaattccttaaa |
2042402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 2107267 - 2107198
Alignment:
| Q |
29 |
gtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaatattt |
98 |
Q |
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| T |
2107267 |
gtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattt |
2107198 |
T |
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