View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17691_low_4 (Length: 316)
Name: NF17691_low_4
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17691_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 10255961 - 10255678
Alignment:
| Q |
17 |
acaacctacacccaacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctatt |
116 |
Q |
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| T |
10255961 |
acaacctacacccaacttcctcccctttcaacacatctatcttcaccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctatt |
10255862 |
T |
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| Q |
117 |
cttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatacaatcccagttttaatatttatctttacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255861 |
cttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatacaatcccagttttaatatttatctttacc |
10255762 |
T |
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| Q |
217 |
ttctcaatcattgcatgaactagctcaagtctctccatcgtatgctcaatggagagaacattcggagcaattagtgtcacagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10255761 |
ttctcaatcattgcatgaactagctcaagtctctccatcgtatgctcaatggagagaacatttggagcaattagtgtcacagtt |
10255678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 10238647 - 10238926
Alignment:
| Q |
17 |
acaacctacacccaacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||| |||| |||||| | |
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| T |
10238647 |
acaacctacacccaacttcctcccctttcaacacatctatcttcaccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtg |
10238746 |
T |
|
| Q |
117 |
cttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatacaatcccagttttaatatttatctttacc |
216 |
Q |
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| T |
10238747 |
tttcttccccaaaaactcattgtttatcactgccaaatcaagatttcttgctgataacggttgtcttgttactatccccgtttcgacgttaattctcact |
10238846 |
T |
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| Q |
217 |
ttctcaatcattgcatgaactagctcaagtctctccatcgtatgctcaatggagagaacattcggagcaattagtgtcac |
296 |
Q |
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|||||||||||| |||||| ||||| | |||||||||| ||||||| | | |||||| |||||| |||| || |||||| |
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| T |
10238847 |
ttctcaatcatttcatgaataagctccaatctctccatcatatgctccacgcagagaatattcggtgcaactattgtcac |
10238926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 10229867 - 10230085
Alignment:
| Q |
17 |
acaacctacacccaacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctatt |
116 |
Q |
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|
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||| || ||||||||||||||| | |
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| T |
10229867 |
acaacctacatccaacttcctcccctttcaacacatcaatcttcaccacccccgaaaactttggcattggattcccaatcgctgcataaacaaacctact |
10229966 |
T |
|
| Q |
117 |
cttcttccccatataatcaccatttatcaccgcgaaatccaggtttcgcgccgataatggttgtcttgatacaatcccagttttaatatttatctttacc |
216 |
Q |
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||||||||||| | ||||| |||||||| || ||||| || |||| || |||||||||||||||| ||| | ||| |||| | ||| ||| | || |
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| T |
10229967 |
cttcttccccaaaaaatcattgtttatcactgccaaatcaagatttcttgctgataatggttgtcttgttactaaccccgtttcgacattaatcctcact |
10230066 |
T |
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| Q |
217 |
ttctcaatcattgcatgaa |
235 |
Q |
| |
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||||||||||| ||||||| |
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| T |
10230067 |
ttctcaatcatggcatgaa |
10230085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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