View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17691_low_9 (Length: 236)
Name: NF17691_low_9
Description: NF17691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17691_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 49151000 - 49150795
Alignment:
| Q |
17 |
atatgtattgcattttaatatattataacctaaataaatattttcttt-atatcaataataaaactttaagccacaatttaagnnnnnnngttgttcctt |
115 |
Q |
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| T |
49151000 |
atatgtatcgcattttaatatattataacctaaataattttttttttttatatcaataataaa-ctttaagccacaatttaagaaaaaaagtttttcctt |
49150902 |
T |
|
| Q |
116 |
tatcatttcaaatgtcaatgttaattgcttctaaacaattgtttgctctaaatttatccaattaagtgaaataaaaaagaaacaaaataagagagggtga |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49150901 |
tatcatttcaaatgtcaatgttaattacttctaaacaattgtttgctctaaatttatccaattaagtgaaataaaaaagaaacaaaataaaagagggtga |
49150802 |
T |
|
| Q |
216 |
ctttttt |
222 |
Q |
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||||||| |
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| T |
49150801 |
ctttttt |
49150795 |
T |
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