View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17692_high_1 (Length: 497)
Name: NF17692_high_1
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17692_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 10068098 - 10068571
Alignment:
| Q |
9 |
cgaagaatatagaaaagatcgaaaaacgtccgaagaacactagcagtaatcttcaatgttccattcaaattaaggcattttctctggtcatcaatcacag |
108 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10068098 |
cgaataatgtagaaaagatcgaaaaacgtccgaagaacactagcagtaatcttcaatgttccattcaaattaaggcattttctctggtcatcaatcacag |
10068197 |
T |
|
| Q |
109 |
ggatgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatcaagaac |
208 |
Q |
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| T |
10068198 |
ggatgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatcaagaac |
10068297 |
T |
|
| Q |
209 |
actacatctagaagctggtttttccaatgattcattannnnnnnctggagtaacacttggtttagattttcttttttcaaatccatcaattgaagaatca |
308 |
Q |
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| T |
10068298 |
actacacctagaagctggtttttccaatgattcattatttttttctggagtaacacttggtttagattttcttttttcaaatccatcaattgaagaatca |
10068397 |
T |
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| Q |
309 |
tattgtgaaaaattaaaagatgatgattctgacttccaatcttcaaatctggacataaatataaactaagttaaggaacatatcatattttttgtcacat |
408 |
Q |
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| T |
10068398 |
tattgtgaaaaattaaaagatgatgattctgacttccaatcttcaaatctggacataaatataaactaagttaaggaacatatcatattttttgtcacat |
10068497 |
T |
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| Q |
409 |
gtcatagaaaaagttcatgacttaaaattgaaaaataatcaactaggaaaaccatagatttatgcttagtttat |
482 |
Q |
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| T |
10068498 |
gtcatagaaaaagctcatgacttaaaattgaaaaataatcaactaggaaaaccatagatttatgcttagtttat |
10068571 |
T |
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Back To:
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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 48464253 - 48464055
Alignment:
| Q |
9 |
cgaagaatatagaaaagatcgaaaaacgtccgaagaacactagcagtaatcttcaatgttccattcaaattaaggcattttctctggtcatcaatcacag |
108 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||||| |||| ||| ||||||||||| ||||| ||| |||||| | | ||||||| | |
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| T |
48464253 |
cgaagaatgtagaaaagatcgaagaacgtgcgaagaacactgatagtagtctgcaatgttccatccaaatcaagacatttttgtttaccgacaatcactg |
48464154 |
T |
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| Q |
109 |
ggatgtaaaagaataatggatccatagatactgccatcacacatgttataacaaagatcttgttccatttctgaagtagtggaccttgtggatcaagaa |
207 |
Q |
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| T |
48464153 |
gaatgtaaaagaaaaaagggtccacagaaattgccagcacacatgtgattacaaagattttgttccatttctgaagcataggcccctgtggatcaagaa |
48464055 |
T |
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