View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17692_high_2 (Length: 466)

Name: NF17692_high_2
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17692_high_2
NF17692_high_2
[»] chr2 (33 HSPs)
chr2 (4-438)||(8800539-8800971)
chr2 (143-223)||(32596012-32596092)
chr2 (138-264)||(33019135-33019262)
chr2 (145-223)||(5533017-5533095)
chr2 (143-291)||(6327052-6327202)
chr2 (242-318)||(15928518-15928594)
chr2 (138-185)||(16518837-16518884)
chr2 (138-223)||(33502258-33502340)
chr2 (138-245)||(43501123-43501229)
chr2 (138-215)||(44439283-44439360)
chr2 (64-207)||(9143012-9143154)
chr2 (145-221)||(42982567-42982643)
chr2 (136-175)||(40401620-40401659)
chr2 (143-185)||(680274-680316)
chr2 (138-184)||(15220840-15220886)
chr2 (71-121)||(15928371-15928421)
chr2 (140-185)||(1976845-1976890)
chr2 (138-215)||(4894136-4894213)
chr2 (138-187)||(10644660-10644709)
chr2 (256-320)||(10126019-10126083)
chr2 (139-199)||(44810420-44810480)
chr2 (136-215)||(3352105-3352184)
chr2 (138-224)||(33047561-33047647)
chr2 (138-247)||(42740973-42741082)
chr2 (273-318)||(3716750-3716795)
chr2 (69-118)||(13238927-13238976)
chr2 (138-223)||(13912808-13912893)
chr2 (136-185)||(28206736-28206785)
chr2 (161-206)||(39008968-39009013)
chr2 (140-185)||(42382399-42382444)
chr2 (63-119)||(42515950-42516007)
chr2 (63-119)||(5055246-5055302)
chr2 (275-307)||(16518715-16518747)
[»] chr6 (32 HSPs)
chr6 (69-321)||(4910830-4911082)
chr6 (138-318)||(25195345-25195524)
chr6 (138-263)||(3482026-3482152)
chr6 (149-221)||(17225875-17225947)
chr6 (143-320)||(28052872-28053052)
chr6 (138-263)||(5724609-5724735)
chr6 (136-202)||(8860546-8860612)
chr6 (138-223)||(29338576-29338659)
chr6 (138-215)||(1485125-1485202)
chr6 (143-263)||(16540087-16540208)
chr6 (138-207)||(34620923-34620992)
chr6 (138-207)||(34748360-34748429)
chr6 (138-223)||(46267-46354)
chr6 (138-202)||(882728-882792)
chr6 (138-214)||(957602-957678)
chr6 (63-119)||(3605728-3605784)
chr6 (138-185)||(3289804-3289850)
chr6 (138-215)||(434216-434293)
chr6 (148-181)||(947628-947661)
chr6 (139-215)||(34027397-34027473)
chr6 (138-185)||(8856366-8856413)
chr6 (171-318)||(19601457-19601599)
chr6 (71-121)||(21455946-21455997)
chr6 (138-227)||(34910964-34911049)
chr6 (273-318)||(2002580-2002625)
chr6 (273-318)||(2008453-2008498)
chr6 (138-227)||(4907980-4908068)
chr6 (138-216)||(6653842-6653922)
chr6 (138-215)||(31305826-31305903)
chr6 (71-120)||(32217399-32217448)
chr6 (138-207)||(32888936-32889005)
chr6 (138-207)||(34026596-34026667)
[»] chr8 (35 HSPs)
chr8 (138-313)||(37684335-37684511)
chr8 (158-320)||(13384653-13384816)
chr8 (138-301)||(32927834-32927998)
chr8 (149-301)||(38868439-38868593)
chr8 (138-224)||(26100125-26100211)
chr8 (138-224)||(35495010-35495096)
chr8 (138-245)||(32994221-32994329)
chr8 (138-181)||(9461517-9461560)
chr8 (135-186)||(27218821-27218872)
chr8 (150-263)||(36200120-36200237)
chr8 (138-224)||(4662882-4662968)
chr8 (69-119)||(41408266-41408316)
chr8 (138-207)||(38868780-38868849)
chr8 (138-175)||(43492216-43492253)
chr8 (143-215)||(7533827-7533898)
chr8 (138-202)||(32101115-32101179)
chr8 (71-119)||(36779467-36779515)
chr8 (143-207)||(40769351-40769415)
chr8 (68-119)||(29970878-29970929)
chr8 (138-186)||(32767445-32767495)
chr8 (138-184)||(2764448-2764494)
chr8 (139-185)||(18356069-18356115)
chr8 (136-202)||(32736504-32736570)
chr8 (138-223)||(33184158-33184244)
chr8 (138-224)||(38335840-38335926)
chr8 (140-185)||(13929678-13929723)
chr8 (158-203)||(32681303-32681348)
chr8 (275-324)||(32994341-32994390)
chr8 (138-207)||(35495297-35495366)
chr8 (135-175)||(3279039-3279079)
chr8 (135-171)||(8693839-8693875)
chr8 (155-215)||(13418815-13418875)
chr8 (138-202)||(16972043-16972107)
chr8 (141-185)||(37451942-37451986)
chr8 (139-175)||(42458311-42458347)
[»] chr5 (26 HSPs)
chr5 (145-253)||(6951291-6951400)
chr5 (154-301)||(31906201-31906349)
chr5 (143-318)||(18851066-18851242)
chr5 (143-298)||(42858052-42858209)
chr5 (150-321)||(22226227-22226399)
chr5 (138-207)||(9184994-9185063)
chr5 (153-260)||(9818717-9818826)
chr5 (138-300)||(10860333-10860497)
chr5 (68-119)||(2868332-2868383)
chr5 (138-184)||(14671085-14671131)
chr5 (136-202)||(34443017-34443083)
chr5 (147-304)||(36289974-36290132)
chr5 (160-221)||(15368396-15368457)
chr5 (152-320)||(28110431-28110599)
chr5 (138-245)||(38845441-38845550)
chr5 (139-203)||(10898762-10898825)
chr5 (143-223)||(39097267-39097347)
chr5 (137-175)||(11577599-11577637)
chr5 (150-203)||(6949673-6949726)
chr5 (153-320)||(11648005-11648171)
chr5 (140-185)||(12208814-12208859)
chr5 (138-171)||(36927666-36927699)
chr5 (71-116)||(38265061-38265106)
chr5 (174-207)||(42529519-42529552)
chr5 (138-186)||(4306570-4306618)
chr5 (232-300)||(6806313-6806381)
[»] chr4 (32 HSPs)
chr4 (138-318)||(35064988-35065169)
chr4 (138-246)||(8604601-8604710)
chr4 (143-223)||(32818354-32818434)
chr4 (136-224)||(53713538-53713626)
chr4 (145-299)||(53913563-53913718)
chr4 (138-321)||(33456296-33456478)
chr4 (144-224)||(45011894-45011974)
chr4 (159-215)||(52965854-52965910)
chr4 (138-224)||(21691191-21691277)
chr4 (154-298)||(39386578-39386723)
chr4 (132-185)||(55927743-55927796)
chr4 (145-197)||(43868183-43868235)
chr4 (146-202)||(44278954-44279010)
chr4 (146-185)||(16552014-16552053)
chr4 (139-300)||(22683806-22683969)
chr4 (138-214)||(16644008-16644083)
chr4 (149-202)||(42694502-42694557)
chr4 (143-207)||(45694651-45694715)
chr4 (71-117)||(1616515-1616561)
chr4 (69-119)||(5025582-5025632)
chr4 (138-184)||(33843771-33843817)
chr4 (69-119)||(39000530-39000580)
chr4 (275-320)||(2326928-2326973)
chr4 (273-318)||(21691335-21691380)
chr4 (150-207)||(26911798-26911855)
chr4 (138-298)||(39733619-39733777)
chr4 (138-207)||(47144251-47144320)
chr4 (273-318)||(49138950-49138995)
chr4 (177-264)||(30357491-30357579)
chr4 (136-224)||(33347147-33347235)
chr4 (167-207)||(47297985-47298025)
chr4 (135-175)||(52342025-52342065)
[»] scaffold0168 (1 HSPs)
scaffold0168 (143-318)||(31751-31930)
[»] chr3 (28 HSPs)
chr3 (143-223)||(31708223-31708303)
chr3 (138-223)||(31013039-31013124)
chr3 (141-215)||(40147832-40147906)
chr3 (140-215)||(35264392-35264467)
chr3 (158-227)||(52364068-52364137)
chr3 (136-200)||(43661883-43661947)
chr3 (63-119)||(44225633-44225689)
chr3 (152-223)||(4526153-4526224)
chr3 (169-223)||(39054105-39054159)
chr3 (138-228)||(46853513-46853603)
chr3 (138-214)||(33791984-33792061)
chr3 (138-207)||(35253446-35253515)
chr3 (69-114)||(53078431-53078476)
chr3 (158-207)||(54173314-54173363)
chr3 (142-202)||(36302225-36302285)
chr3 (135-182)||(4401350-4401397)
chr3 (140-175)||(5406973-5407008)
chr3 (136-223)||(49356370-49356457)
chr3 (139-173)||(7262885-7262919)
chr3 (71-121)||(21261223-21261273)
chr3 (135-185)||(46551244-46551294)
chr3 (274-320)||(52141361-52141407)
chr3 (138-175)||(30958105-30958142)
chr3 (138-175)||(30973917-30973954)
chr3 (138-167)||(41591332-41591361)
chr3 (140-172)||(31130038-31130070)
chr3 (139-223)||(31492788-31492870)
chr3 (138-202)||(41596128-41596192)
[»] chr1 (42 HSPs)
chr1 (138-263)||(38797609-38797734)
chr1 (138-301)||(28083867-28084031)
chr1 (138-222)||(34915088-34915172)
chr1 (141-223)||(3016183-3016265)
chr1 (137-260)||(1514326-1514450)
chr1 (138-224)||(7524133-7524219)
chr1 (145-202)||(2555943-2556000)
chr1 (147-224)||(11049270-11049347)
chr1 (153-202)||(30850393-30850442)
chr1 (154-322)||(47321902-47322070)
chr1 (71-224)||(30557524-30557674)
chr1 (63-119)||(4347066-4347122)
chr1 (161-264)||(7790644-7790748)
chr1 (155-207)||(24587949-24588001)
chr1 (138-185)||(35961427-35961474)
chr1 (273-320)||(36780232-36780279)
chr1 (136-203)||(37733611-37733678)
chr1 (145-306)||(3416017-3416179)
chr1 (138-175)||(213260-213297)
chr1 (138-183)||(18325087-18325132)
chr1 (150-207)||(28267900-28267957)
chr1 (138-223)||(32370010-32370095)
chr1 (138-202)||(45660584-45660648)
chr1 (141-176)||(1416203-1416238)
chr1 (158-201)||(35548832-35548875)
chr1 (149-220)||(50569633-50569704)
chr1 (147-221)||(10324926-10325000)
chr1 (149-223)||(14644718-14644792)
chr1 (276-318)||(30557441-30557483)
chr1 (145-207)||(34721826-34721888)
chr1 (145-183)||(47053465-47053503)
chr1 (136-185)||(1233364-1233413)
chr1 (138-202)||(2099666-2099731)
chr1 (138-221)||(20720839-20720919)
chr1 (138-175)||(24697577-24697614)
chr1 (150-221)||(26373535-26373603)
chr1 (138-175)||(48548993-48549030)
chr1 (71-119)||(13344865-13344913)
chr1 (138-186)||(27962095-27962143)
chr1 (69-109)||(36447660-36447700)
chr1 (71-119)||(40352483-40352531)
chr1 (137-185)||(52263625-52263673)
[»] chr7 (26 HSPs)
chr7 (69-315)||(28724963-28725209)
chr7 (138-263)||(22195844-22195970)
chr7 (143-224)||(42816452-42816533)
chr7 (138-222)||(40491600-40491684)
chr7 (146-205)||(39956266-39956325)
chr7 (138-207)||(25156237-25156306)
chr7 (138-215)||(27571891-27571968)
chr7 (138-175)||(40561737-40561774)
chr7 (139-202)||(40795969-40796032)
chr7 (155-245)||(41386811-41386902)
chr7 (138-217)||(41788343-41788422)
chr7 (138-201)||(45557408-45557471)
chr7 (150-200)||(32295228-32295278)
chr7 (146-224)||(35772278-35772356)
chr7 (63-119)||(31625560-31625616)
chr7 (143-223)||(32683582-32683662)
chr7 (138-185)||(17111904-17111951)
chr7 (135-185)||(9480585-9480635)
chr7 (138-176)||(12306791-12306829)
chr7 (250-320)||(29163417-29163487)
chr7 (63-117)||(32683694-32683748)
chr7 (135-165)||(41010035-41010065)
chr7 (138-207)||(22310438-22310507)
chr7 (144-196)||(525980-526032)
chr7 (138-166)||(33853463-33853491)
chr7 (135-207)||(38123642-38123714)
[»] scaffold0361 (1 HSPs)
scaffold0361 (138-207)||(14093-14162)
[»] scaffold0024 (1 HSPs)
scaffold0024 (139-224)||(23573-23658)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 438
Target Start/End: Original strand, 8800539 - 8800971
Alignment:
Q  4 atgtagaagaatatgaggttcttgagatttcaaccaccatcaaacgtatatttggttgcgt---ggaaaaaattgattttgatataatcaattttgtaga 100  Q
    ||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  8800539 atgtaaaaaaatatgtggttcttgagatttcaaccaccaccaaacgtatatttggttgcgttgtggaaaaaattgattttgatataatcaattttgtaga 8800638  T
Q  101 attgattttagttaaaagtaannnnnnnnnaaa-tgtaatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatca 199  Q
    |||||||||| ||||||||||         ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  8800639 attgattttaattaaaagtaattttttttaaaaatgtaatttatgtttggatacgttcatgtaaaagtgagttgaattataaatttgtatattaaaatca 8800738  T
Q  200 attatagattcaaaagttacaaatcatatctcaagtataatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattc 299  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  8800739 attatagattcaaaagttacaaatcatatctcaaatataatcaattatggagacatggtcaattataatcaacaacaaccaaacatatcagaatcaattc 8800838  T
Q  300 tatacctccaaaatcaattataaccctttaaaaatatgaagaagnnnnnnnntacaccaaaagaaaagtttaatacgatcttgtaacatctaaattcaac 399  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||         |||||||| |||||||||||||||||||||||||||||||||||||||    
T  8800839 tatacctccaaaatcaattataaccctctaaaaata-gaacaa-----aaaatacaccaagagaaaagtttaatacgatcttgtaacatctaaattcaac 8800932  T
Q  400 tctttgttgcagcaaacctacgagttacacttcttccaa 438  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8800933 tctttgttacagcaaacctacgagttacacttcttccaa 8800971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 32596092 - 32596012
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||||||||| ||| |||||||||||||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||    
T  32596092 tgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaat 32596012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 33019135 - 33019262
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||| || |  |||||| |||||||  || | |||| ||    
T  33019135 atttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaata 33019234  T
Q  237 taatcaattatagagacataatcaatta 264  Q
    ||||||||| ||||| || |||||||||    
T  33019235 taatcaattctagaggcagaatcaatta 33019262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 5533017 - 5533095
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||  ||| ||||||| |||||||    
T  5533017 tttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaat 5533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 291
Target Start/End: Original strand, 6327052 - 6327202
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaat-tataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata-tctcaagtataat 240  Q
    ||||||||| ||| | | |||||||||||||||  | ||||||||||||||| ||| |||| |||| ||||||  |||||||  || | ||||||| |||    
T  6327052 tgtttggatgcatccgtctaaaagtgagttgaaactttaaatttatatgttagaattaattttagaatcaaaaactacaaattttagtttcaagtagaat 6327151  T
Q  241 caattatagagacataatcaattacaatcaataacaaccaaacatatcaga 291  Q
    ||||| |||| ||||||||||||  |||||| ||||||||||||| |||||    
T  6327152 caattctagaaacataatcaattttaatcaacaacaaccaaacatgtcaga 6327202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 15928518 - 15928594
Alignment:
Q  242 aattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||||||||| ||||||||||  | |||| ||||||||||||| ||| ||||||||||| ||||||| ||||||||    
T  15928518 aattatagagatataatcaattctactcaacaacaaccaaacatgtcaaaatcaattctacacctccagaatcaatt 15928594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 16518884 - 16518837
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  16518884 atttgtgtttggatacattcatgtaaaagtgagttgaactataaattt 16518837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 33502340 - 33502258
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||||||||||||   |||||||||||||||| ||||||| | | ||| |||||||||| |||| |||||||||||||||    
T  33502340 atttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaaat 33502258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 43501229 - 43501123
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata-tctcaagta 236  Q
    |||| |||||| |||||||||||||||| |||||||||||||||  || | ||||| |||||||| || | ||||||| |||||||| || | |||||||    
T  43501229 atttgtgtttgtatacattcatgtaaaactgagttgaattataa--ttttgtgttagaatcaattctaaaatcaaaagctacaaatcctagtttcaagta 43501132  T
Q  237 taatcaatt 245  Q
     ||||||||    
T  43501131 gaatcaatt 43501123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 44439360 - 44439283
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||||||||||||  || ||||||||||||||||||  ||||||||   |||||||||||||| |||| |||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaag 44439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 9143154 - 9143012
Alignment:
Q  64 tggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagtaannnnnnnnnaaatgtaatttatgtttggatacattcatgtaa 163  Q
    ||||||||||||||||| ||| |||  ||| |||||||||||||||||||||| ||||         |||  |  ||| |||||| ||||||||||||||    
T  9143154 tggaaaaaattgattttaataaaattgattatgtagaattgattttagttaaatgtaattttgactaaaa-atggtttttgtttgaatacattcatgtaa 9143056  T
Q  164 aagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    | |||||||||||||| ||| | | ||| ||||| |||||||||    
T  9143055 atgtgagttgaattatgaatatgtgtgtgaaaattaattataga 9143012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 42982643 - 42982567
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    ||||||||||||||||||||||||||||| |  |||||||| | ||| |||||||||| | || ||||||| |||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaa 42982567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 40401620 - 40401659
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  40401620 taatttatgtttggatacattcatgtaaaagtcagttgaa 40401659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 680274 - 680316
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  680274 tgtttgcatacattcatgtaaaagtgagttgaattctaaattt 680316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatt 184  Q
    |||||||||||||||||||||||| |||||||||||||  |||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 15928371 - 15928421
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagtaa 121  Q
    ||||||||||| |||||| |||| ||||||||||||||| |||||||||||    
T  15928371 aattgattttggtataattaattctgtagaattgattttggttaaaagtaa 15928421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 1976845 - 1976890
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  1976845 ttatgtttggatacattcatgtaaaagtgagttcaacaataaattt 1976890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 4894136 - 4894213
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||||||| ||||||||||| ||||||||| |||||| ||||||||   | | | ||||||||||||| |||||||    
T  4894136 atttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaag 4894213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 10644709 - 10644660
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttat 187  Q
    ||||| ||||||||||||| || ||||||||||||||| |||||||||||    
T  10644709 atttaagtttggatacatttatataaaagtgagttgaactataaatttat 10644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 10126083 - 10126019
Alignment:
Q  256 aatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    |||||||| || || | |||||||||| |||||||||||||||| ||| |||| |||||||||||    
T  10126083 aatcaatttcattcgacaacaaccaaatatatcagaatcaattcaatatctcccaaatcaattat 10126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 44810480 - 44810420
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatca 199  Q
    |||||||||||||| |||||  ||||||||| |||||| ||||||||  ||||||||||||    
T  44810480 tttatgtttggatatattcaaataaaagtgacttgaatgataaatttgaatgttaaaatca 44810420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 3352184 - 3352105
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||||||||| || |  || |||||||||| |||||||  |||||||| | ||| ||||||||||||||| |||||||    
T  3352184 taatttatgttttgacaattttatgtaaaagtaagttgaaacataaatttgtgtgtgaaaatcaattatagaatcaaaag 3352105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 33047561 - 33047647
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||||||||||||| ||||||||||||| ||||   ||||||| | ||| ||||||| || || | ||||||| ||||||||    
T  33047561 atttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaaatc 33047647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 42741082 - 42740973
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||| ||||||| |||||||||||||||| |   |||||||   ||| |||||||||| |||| ||||||| |||||||| || | |||||||    
T  42741082 atttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagta 42740984  T
Q  237 taatcaattat 247  Q
     ||||||||||    
T  42740983 gaatcaattat 42740973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 3716750 - 3716795
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    |||||||||| || ||||||| ||||||||||||| ||||||||||    
T  3716750 aacaaccaaatatgtcagaattaattctatacctctaaaatcaatt 3716795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 13238976 - 13238927
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaag 118  Q
    |||||||||||||||  |||  |||||||| |||||||||||||||||||    
T  13238976 aaaattgattttgattgaattcattttgtaaaattgattttagttaaaag 13238927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 13912893 - 13912808
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| |||||||||||| |||||||||| |||||||||   ||||||| | ||| ||||| |||| |||| | |||| ||||||||    
T  13912893 atttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaat 13912808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 28206785 - 28206736
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||||||| | |||||||||||||||||  ||||||| ||||||||    
T  28206785 taatttatgtttaggtacattcatgtaaaagtttgttgaataataaattt 28206736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 39008968 - 39009013
Alignment:
Q  161 taaaagtgagttgaattataaatttatatgttaaaatcaattatag 206  Q
    ||||||||||||||||||||||||||| ||| ||| ||||| ||||    
T  39008968 taaaagtgagttgaattataaatttatgtgtaaaattcaatcatag 39009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 42382399 - 42382444
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||||||||| ||| ||| ||||||||| ||||||||||||||    
T  42382399 ttatgtttggataaatttatggaaaagtgaggtgaattataaattt 42382444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 42515950 - 42516007
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttg-tagaattgattttagttaaaagt 119  Q
    ||||| ||||||||||||||||||||  | ||||  ||||||||||||||||||||||    
T  42515950 gtggagaaaattgattttgatataattgagtttgagagaattgattttagttaaaagt 42516007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 5055302 - 5055246
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||| |||| |||||||||||  ||| ||||||| |||||||||||| |||||||||    
T  5055302 gtggcaaaatttgattttgattgaattaattttgcagaattgattttggttaaaagt 5055246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 16518747 - 16518715
Alignment:
Q  275 caaccaaacatatcagaatcaattctatacctc 307  Q
    ||||||||||||||||||||||||||| |||||    
T  16518747 caaccaaacatatcagaatcaattctacacctc 16518715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 69 - 321
Target Start/End: Complemental strand, 4911082 - 4910830
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaagtaannnnnnnnnaaatgtaatttatgtttggatacattcatgtaaaagtg 168  Q
    |||||||||||||||| |||  ||| | ||||||| ||||| |||||||||||         ||| || ||||||||||||||||||| |||||||||||    
T  4911082 aaaattgattttgatagaattgattctctagaattaattttggttaaaagtaattctgactaaaa-gtgatttatgtttggatacatttatgtaaaagtg 4910984  T
Q  169 agttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagagacataatcaattacaa 267  Q
    ||| ||| ||||||||| ||||| |||||||||| |||| ||||||| ||||||||||| | ||||||| |||||||| | ||| || ||||||||  ||    
T  4910983 agtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaa 4910884  T
Q  268 tcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattata 321  Q
    |  |  |||||||||||| ||||||||||||||| || | || |||||||||||    
T  4910883 ttgacgacaaccaaacatgtcagaatcaattctacacattcagaatcaattata 4910830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 318
Target Start/End: Original strand, 25195345 - 25195524
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatctcaagtat 237  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||| | | | ||||||||||||||| | ||||  ||||||||   | |||||||     
T  25195345 atttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatccgct-tcaagtag 25195443  T
Q  238 aatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||||||   ||| || ||||||||| | || ||| ||||||||||| |||||||||||| || || |||| ||||||||    
T  25195444 aatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaatt 25195524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 3482152 - 3482026
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||| |||||||||||||||||| ||||||| |||||| || | ||| |||||||||| || | ||||| | |||||||| || | |||||||    
T  3482152 atttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaacttcaagta 3482053  T
Q  237 taatcaattatagagacataatcaatt 263  Q
    ||||||||| || ||||| ||||||||    
T  3482052 taatcaattctaaagacagaatcaatt 3482026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 17225947 - 17225875
Alignment:
Q  149 gatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||| |||| ||||||| |||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 320
Target Start/End: Complemental strand, 28053052 - 28052872
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaattt--atatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtataa 239  Q
    ||||| |||||||| |||||||||||| || || ||||||| |  |||||| |||||||||| |||| | || |  |||||||  ||||| |||||||||    
T  28053052 tgttttgatacatttatgtaaaagtgacttaaactataaatatgtatatgtgaaaatcaattttagaattaataactacaaattctatcttcaagtataa 28052953  T
Q  240 tcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    |||||| || ||||| ||||||||| | |  |||||||  |||||| |||||||||||| |||| || |  ||||||||||    
T  28052952 tcaattctatagacacaatcaattatacttgataacaattaaacatgtcagaatcaattttataacttctgaatcaattat 28052872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 5724609 - 5724735
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||| |||  ||||| |||||||||||| ||| ||| |||| | ||| ||||||||||||||| | |||||||||||||| || | |||||||    
T  5724609 atttgtgtttgaatatgttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagta 5724708  T
Q  237 taatcaattatagagacataatcaatt 263  Q
     |||||||| | ||| || ||||||||    
T  5724709 gaatcaattttggaggcaaaatcaatt 5724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 8860612 - 8860546
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||||| ||||| |||||||||||| ||||||||||||||  |||||||||| ||| ||||||||||    
T  8860612 taatttgtgtttagatacattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaatt 8860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 29338576 - 29338659
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||||||||||||| ||| |||||||||||| |||||||| |||||  ||||||| |||||||| || | ||| |||||||||||    
T  29338576 atttatgtttggatatatttatgtaaaagtgaattgaattaaaaatt--tatgttagaatcaattctaaaatcataagttacaaat 29338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 1485125 - 1485202
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||| ||||||||||| | ||||||||||||||||||  ||||||||   |||||||||||||| |||| |||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaag 1485202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 16540208 - 16540087
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatc 241  Q
    |||||||||||||| ||||||||||||||| || ||||||| | || || ||| ||||||  | | ||||||| |||||||| || | ||||||| ||||    
T  16540208 tgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttcaagtagaatc 16540109  T
Q  242 aattatagagacataatcaatt 263  Q
    |||| | |||||| ||||||||    
T  16540108 aattttggagacagaatcaatt 16540087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 34620992 - 34620923
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||   ||| |||||||||| ||||    
T  34620992 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctaga 34620923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 34748429 - 34748360
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||   ||| |||||||||| ||||    
T  34748429 atttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctaga 34748360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 46267 - 46354
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattat--aaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||||||||||||| || ||||||||||||||||||  |||||| | ||||| |||| ||| |||| ||||||| |||||||    
T  46267 atttgtgtttggatacattcgtggaaaagtgagttgaattataaaaatttgtttgttagaatctattctagaatcaaaagctacaaat 46354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 882792 - 882728
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    ||||||||||||||||||||||| ||||||||||| ||  ||||||||  |||| ||||||||||    
T  882792 atttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 957602 - 957678
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaa 214  Q
    |||||||||||||||||||||||||||| |||||| |||| ||| ||| | ||| |||||| ||||| || ||||||    
T  957602 atttatgtttggatacattcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatcgattatggaatcaaaa 957678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 3605728 - 3605784
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  3605728 gtggacaaaattgattttgatataattgattttgtagaattgattttgattaaaagt 3605784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 3289850 - 3289804
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  3289850 atttgtgtttggatacatt-atgtaaaagtgagttgaattataaattt 3289804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 434216 - 434293
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||| |||||||||| |||| ||||||||||||||||| | ||||||||| | | |||||||||| || | |||||||    
T  434216 atttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaag 434293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 947661 - 947628
Alignment:
Q  148 ggatacattcatgtaaaagtgagttgaattataa 181  Q
    ||||||||||||||||||||||||||||||||||    
T  947661 ggatacattcatgtaaaagtgagttgaattataa 947628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 34027397 - 34027473
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||| || |||| |||||||||| |||||||||||| ||||||||   ||| |||||||||| |||| |||||||    
T  34027397 tttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaag 34027473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 8856413 - 8856366
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||| ||||||||||||||||||| |||||||||||||  ||||||||    
T  8856413 atttgtgtttggatacattcatgtgaaagtgagttgaaacataaattt 8856366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 318
Target Start/End: Original strand, 19601457 - 19601599
Alignment:
Q  171 ttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatctcaagtataatcaattatagagacataatcaattacaatca 270  Q
    ||||| ||||||||||| ||| ||||||| ||||||| ||||||| |||||||| |     | ||| |||||||| |  ||||| ||||||||  ||||     
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatcct-----aggtagaatcaattctttagacagaatcaattctaatcg 19601551  T
Q  271 ataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    | | |||| || |||| ||||||||||| || |||| |||||||||||    
T  19601552 aaagcaactaagcataccagaatcaattgtacaccttcaaaatcaatt 19601599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 21455997 - 21455946
Alignment:
Q  71 aattgattttgatataatcaattttgta-gaattgattttagttaaaagtaa 121  Q
    ||||||||||||||||||  | |||||| |||||||||||||||||||||||    
T  21455997 aattgattttgatataattgagtttgtaagaattgattttagttaaaagtaa 21455946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 34911049 - 34910964
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata 227  Q
    |||||||||||||||  ||||||||||||| |||| || |||||  || | ||| |||||||||| |||| ||||||| |||||||||||    
T  34911049 atttatgtttggata--ttcatgtaaaagttagttaaactataa--ttgtgtgtcaaaatcaattctagaatcaaaagctacaaatcata 34910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 2002580 - 2002625
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||||||||||| ||| |||||||||||  |||||||||||||||    
T  2002580 aacaaccaaacatgtcaaaatcaattctacgcctccaaaatcaatt 2002625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 2008453 - 2008498
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||| ||||||| |||||| |||||||| ||||||||||||||||    
T  2008453 aacaatcaaacatgtcagaaacaattctacacctccaaaatcaatt 2008498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 4908068 - 4907980
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata 227  Q
    |||| |||||||||| | |||||||||||| ||| ||||||||||||| | ||| ||  | ||||||||| ||||||  |||||||||||    
T  4908068 atttgtgtttggataaaatcatgtaaaagtaagt-gaattataaatttgtttgtgaaggtaaattatagaatcaaaaactacaaatcata 4907980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 6653922 - 6653842
Alignment:
Q  138 atttatgtttggatacattcat--gtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagt 216  Q
    |||| |||||||||||| ||||  ||||||||||||| || |||||||||  |||| ||| |||||| |||| ||||||||    
T  6653922 atttgtgtttggatacaatcatatgtaaaagtgagttaaactataaatttgcatgtgaaactcaattctagaatcaaaagt 6653842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 31305826 - 31305903
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||||||||||||| ||| |||||||||||||||||   ||||||||   |||  ||||||||| |||| |||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaag 31305903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 32217448 - 32217399
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagta 120  Q
    |||| ||||||||| ||| |||| |||||||||||||||| |||||||||    
T  32217448 aatttattttgatagaatgaattatgtagaattgattttaattaaaagta 32217399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 32888936 - 32889005
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||| ||| ||| ||||||||||||||||||  ||||||||| || | ||||| |||| ||||    
T  32888936 atttatgtttgaatatatttatgtaaaagtgagttgaacaataaatttaaatttgaaaataaattgtaga 32889005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 34026596 - 34026667
Alignment:
Q  138 atttatgtttggatac--attcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||| |  |||||||||||| |||||||||| || ||||||  ||| |||||||||| ||||    
T  34026596 atttatgtttggatgcgtattcatgtaaaaatgagttgaataattaatttaagtgtaaaaatcaattgtaga 34026667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 138 - 313
Target Start/End: Complemental strand, 37684511 - 37684335
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||| |   |||||||||||| |||| |||||||  ||||||| || | |||||||    
T  37684511 atttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagta 37684412  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaat 313  Q
     |||||||| | |||||| ||||||||  | || | ||||||||||||| || ||||||||| || |||||||||||    
T  37684411 gaatcaattctggagacaaaatcaattctactccacaacaaccaaacatttcggaatcaattttacacctccaaaat 37684335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 158 - 320
Target Start/End: Original strand, 13384653 - 13384816
Alignment:
Q  158 atgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtataatcaattatagagacata 256  Q
    |||||||||||||||||| ||||||||| | ||| |||||||||| |||| ||||||| |||||||  || || ||| || |||||||| | |||| | |    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttggagaaaga 13384752  T
Q  257 atcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    |  ||||  | || | ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  13384753 acaaattcgactcgacaacaaccaaacatgtcagaatcaattctacacctccaaaatcaattat 13384816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 301
Target Start/End: Complemental strand, 32927998 - 32927834
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |||| || | ||||||| |||||||| || | |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagta 32927899  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattcta 301  Q
     |||||| ||| ||| || ||||||||  | |  | | ||||||||||| ||||| |||||||||    
T  32927898 gaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaattcta 32927834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 301
Target Start/End: Complemental strand, 38868593 - 38868439
Alignment:
Q  149 gatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattat 247  Q
    ||||||||  ||||||| ||||||||| ||||||||| | ||| |||||||||||||||  |||||| |||||||| || | ||||||| |||||||| |    
T  38868593 gatacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatttt 38868494  T
Q  248 agagacataatcaattacaatcaataacaacc-aaacatatcagaatcaattcta 301  Q
    |||| ||| |||||||  | || | ||||||| ||| ||||||||||||||||||    
T  38868493 agaggcatcatcaattttactcgacaacaaccaaaatatatcagaatcaattcta 38868439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 26100125 - 26100211
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| ||||||||| |||| ||||||||||||||||||  |||||||| | ||| ||||||||||||||| ||||||| ||||||||    
T  26100125 atttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatc 26100211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 35495096 - 35495010
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||||||||| |||||||||||||| ||||||| |||| |||| | ||| |||| ||||| |||| ||||||| ||||||||    
T  35495096 atttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatc 35495010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 32994221 - 32994329
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||||||||||||  ||||||||||||||| | ||| | ||||||||| | | | |||||||||| |||| ||||||| || |||||||| | |||||||    
T  32994221 atttatgtttggactcattcatgtaaaagtcatttgcactataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagta 32994320  T
Q  237 taatcaatt 245  Q
     ||||||||    
T  32994321 gaatcaatt 32994329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 9461517 - 9461560
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataa 181  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  9461517 atttgtgtttggatacattcatataaaagtgagttgaattataa 9461560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 27218821 - 27218872
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaattataaattta 186  Q
    ||||||||||||| |||| ||| |||||||| ||||||||||||||||||||    
T  27218821 gtaatttatgtttagataaatttatgtaaaaatgagttgaattataaattta 27218872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 36200120 - 36200237
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatt---tatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaatt 245  Q
    |||||||||||||||||||| ||||||||||||||    || ||| |||||||||| |||| ||||||   |||||||||| | ||||||  ||||||||    
T  36200120 atacattcatgtaaaagtgaattgaattataaattataaatgtgtgaaaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaatt 36200219  T
Q  246 atagagacataatcaatt 263  Q
     | ||||||||| |||||    
T  36200220 ctggagacataaacaatt 36200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 4662882 - 4662968
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||||||||||||||| | ||||| |||||||| |||| |||| | ||| |||||||||| ||||  |||||| ||||||||    
T  4662882 atttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatc 4662968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 41408316 - 41408266
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||| ||||    
T  41408316 aaaattgattttgattgaattaattttgtagaattgattttagttagaagt 41408266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 38868849 - 38868780
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||| |||| |||| ||||||||||||||||| ||| ||||||||| |  || |||||||||||||||    
T  38868849 atttatatttgaatacgttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatcaattataga 38868780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 43492216 - 43492253
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43492216 atttatgtttggatacattcatgtaaaagtaagttgaa 43492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 7533898 - 7533827
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||||| ||||||||| |||||||||||| |||||||| ||  ||||| |||||||||| |||| |||||||    
T  7533898 tgtttgggtacattcatataaaagtgagtt-aattataagttcgtatgtaaaaatcaattttagaatcaaaag 7533827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 32101179 - 32101115
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||| ||| |||||||||| |||||||||||||||||| ||||||||| ||| | ||||| ||||    
T  32101179 atttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgtatatgaaaattaatt 32101115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 36779515 - 36779467
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||||    
T  36779515 aattgattttgatataattgattttgtagaattgattttgattaaaagt 36779467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 40769351 - 40769415
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||| |||||||  ||||||| ||| ||||||||||||||| | ||| |||||||||||||||    
T  40769351 tgtttgaatacatttgtgtaaaattgaattgaattataaatttgtgtgtgaaaatcaattataga 40769415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 29970929 - 29970878
Alignment:
Q  68 aaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||||||||||||||| |||  | |||||| ||||||||||||||||||||    
T  29970929 aaaaattgattttgatagaattgaatttgtataattgattttagttaaaagt 29970878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 32767495 - 32767445
Alignment:
Q  138 atttatgtttggatacattca--tgtaaaagtgagttgaattataaattta 186  Q
    |||||||||||||||||||||  |||||||||||||||||  |||||||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaattta 32767445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 2764448 - 2764494
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatt 184  Q
    |||||| |||||||||||||| ||||||||||||||||  |||||||    
T  2764448 atttatatttggatacattcacgtaaaagtgagttgaaccataaatt 2764494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 18356069 - 18356115
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||| ||||||||| || |||| ||||||||||||||||||||    
T  18356069 tttatgttcggatacatttatctaaacgtgagttgaattataaattt 18356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 32736570 - 32736504
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||||| | |||| |||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||||    
T  32736570 taatttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatt 32736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 33184244 - 33184158
Alignment:
Q  138 atttatgtttggatacattcatgtaaaa-gtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||| |||||||| ||| |||| |||||||||||||||| ||| | ||| ||||| ||||||||||  |||| ||||||||    
T  33184244 atttgtgtttagatacatttatgaaaaaagtgagttgaattataagtttgtctgtaaaaataaattatagataaaaaaattacaaat 33184158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 38335840 - 38335926
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||| |||||||||||||||||||||||||  | ||||||||| |  || |||||||||| || | |||||||  |||||||    
T  38335840 atttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatc 38335926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 13929678 - 13929723
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||||    
T  13929678 ttatgttttgatacattcatgtaaaagtgggttgaaaaataaattt 13929723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 32681303 - 32681348
Alignment:
Q  158 atgtaaaagtgagttgaattataaatttatatgttaaaatcaatta 203  Q
    |||||||||||||||||||||||||||| | | | |||||||||||    
T  32681303 atgtaaaagtgagttgaattataaatttgtgtttaaaaatcaatta 32681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 32994341 - 32994390
Alignment:
Q  275 caaccaaacatatcagaatcaattctatacctccaaaatcaattataacc 324  Q
    ||||||||||||||| ||||||||||| || |||| ||||||||| ||||    
T  32994341 caaccaaacatatcataatcaattctacacatccagaatcaattacaacc 32994390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 35495366 - 35495297
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||||||  ||||||||| |||||  ||||||||   | | |||||||||||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattataga 35495297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 3279079 - 3279039
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  3279079 gtaatttgtttttggatatattcatgtaaaagtgagttgaa 3279039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 8693875 - 8693839
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagt 171  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  8693875 gtaatttatgtttggataaattcatgcaaaagtgagt 8693839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 13418815 - 13418875
Alignment:
Q  155 ttcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||||| ||| |||||||||  ||||||||  ||||||||||||||||| || |||||||    
T  13418815 ttcatgttaaattgagttgaacgataaatttgaatgttaaaatcaattatggaatcaaaag 13418875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 16972043 - 16972107
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||| |||||| |||||||||||||||||||| |||||  |||||||| | | | ||||||||||    
T  16972043 atttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaatt 16972107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 37451942 - 37451986
Alignment:
Q  141 tatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||||  ||||||||||||||||||||| |||| ||||||||    
T  37451942 tatgtttgagtacattcatgtaaaagtgagtcgaataataaattt 37451986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 42458311 - 42458347
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||| |||||||||||||||||| |||||||||    
T  42458311 tttatgttcggatacattcatgtaaaaatgagttgaa 42458347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 6951291 - 6951400
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaa 243  Q
    |||||||| |||||||||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||| |||||||| || | ||||||| ||||||    
T  6951291 tttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaa 6951390  T
Q  244 ttatagagac 253  Q
    ||||||||||    
T  6951391 ttatagagac 6951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 31906349 - 31906201
Alignment:
Q  154 attcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagaga 252  Q
    |||||||||||||||||||||| ||||||||||||||  || |||||||||| | ||||||||||||||||||| | ||||||| ||||||||||||||     
T  31906349 attcatgtaaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaattatagagg 31906250  T
Q  253 cataatcaattacaatcaataacaaccaaacatatcagaatcaattcta 301  Q
     | || |||||| |  ||| || || ||||||| ||| |||||||||||    
T  31906249 taaaaacaattaaacccaaaaataatcaaacatgtcataatcaattcta 31906201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 318
Target Start/End: Original strand, 18851066 - 18851242
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatc 241  Q
    ||||||||||  |||||||||||||||||| || ||||||| | | ||| |||||||||| || | ||||||| ||||||||||| | ||||||| ||||    
T  18851066 tgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc 18851165  T
Q  242 aattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    |||||||| || |  |||||||  |||  ||| ||||||||||  ||||| ||||||||| | ||||| ||||||||    
T  18851166 aattatagggataggatcaattctaattgatagcaaccaaacacgtcagagtcaattctacaactccataatcaatt 18851242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 298
Target Start/End: Complemental strand, 42858209 - 42858052
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatc 241  Q
    |||||| ||| |||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| | ||||| | |||||| || | ||||||| ||||    
T  42858209 tgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatc 42858110  T
Q  242 aattatagagacataatcaattacaa-tcaataacaaccaaacatatcagaatcaatt 298  Q
    |||| ||||| || ||| ||||  || |||| |||||||||||||   ||||||||||    
T  42858109 aattctagagtcaaaatgaattctaagtcaacaacaaccaaacatgctagaatcaatt 42858052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 321
Target Start/End: Original strand, 22226227 - 22226399
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtataatcaattata 248  Q
    ||||||| |||||||||| ||| ||| | ||||||| | ||| ||| | |||| || | ||||||| |||||||  ||||| |||||| ||||||| |      
T  22226227 atacattaatgtaaaagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaatcaac 22226326  T
Q  249 gagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattata 321  Q
     | ||| ||||||||  | || | ||||||||||||| ||||||||||||||| || ||||||||||||||||    
T  22226327 aaaacaaaatcaattttagtcgacaacaaccaaacatgtcagaatcaattctacacgtccaaaatcaattata 22226399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 9184994 - 9185063
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||| ||||| | ||||| ||||||||||||  ||||||||| ||||||||||||||| ||||    
T  9184994 atttatgtttgaatacacttatgtagaagtgagttgaacgataaatttaaatgttaaaatcaattctaga 9185063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 9818826 - 9818717
Alignment:
Q  153 cattcatgtaaaagtgagttgaattataaatttatatgt-taaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattataga 250  Q
    ||||||| ||||||||||||||| ||||||||| | | |  |||||||||| |||| ||||||| ||||||||||| | ||||||| |||||||||| ||    
T  9818826 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 9818727  T
Q  251 gacataatca 260  Q
    | || |||||    
T  9818726 ggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 10860333 - 10860497
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagt- 235  Q
    ||||||||| |||||||||||||| |||||||||| ||| ||||||  | |  | |||||||| | ||||  |||||| |||||||  || | ||||||     
T  10860333 atttatgttcggatacattcatgtgaaagtgagttaaatgataaatccaaagctaaaaatcaactctagaggcaaaagctacaaattctagcttcaagtc 10860432  T
Q  236 ataatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattct 300  Q
    | ||||| || |||| ||| ||||||||| | ||||||| |||||||||| ||| ||||||||||    
T  10860433 agaatcacttctagacacaaaatcaattatattcaataaaaaccaaacatgtcaaaatcaattct 10860497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 2868332 - 2868383
Alignment:
Q  68 aaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||  || ||| ||||||||||||||||||||||||||||||    
T  2868332 aaaaattgattttagtagaattaattttgtagaattgattttagttaaaagt 2868383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 14671131 - 14671085
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatt 184  Q
    |||||||||||||| ||||||||||||||||||||| || |||||||    
T  14671131 atttatgtttggatgcattcatgtaaaagtgagttgtatgataaatt 14671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 34443083 - 34443017
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    ||||||||||||| ||||||| || ||||||||| |||||  |||||||| | ||||||||||||||    
T  34443083 taatttatgtttgaatacatttatataaaagtgaattgaaaaataaatttgtttgttaaaatcaatt 34443017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 304
Target Start/End: Complemental strand, 36290132 - 36289974
Alignment:
Q  147 tggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaatt 245  Q
    ||||||||||| ||||||| ||||||||| ||||||| | | | | |||||||| ||| || |||||| | ||||||| || | ||||||||||||||||    
T  36290132 tggatacattcgtgtaaaactgagttgaactataaatatgtgtctgaaaatcaaatatggaatcaaaactaacaaatcttaacttcaagtataatcaatt 36290033  T
Q  246 atagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatac 304  Q
    ||  |  ||  || ||||  | || | |||||||||| ||||||||||||||| |||||    
T  36290032 atgaatgcaacattaattctactcgacaacaaccaaatatatcagaatcaattttatac 36289974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 15368457 - 15368396
Alignment:
Q  160 gtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    |||||| ||||||||||||||||||| | ||||| |||||||| || | |||||||||||||    
T  15368457 gtaaaactgagttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaa 15368396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 320
Target Start/End: Original strand, 28110431 - 28110599
Alignment:
Q  152 acattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattataga 250  Q
    ||||| || |||||||||||| || ||||||||| | ||| |||||||||| || | ||||||||||||||||  | | | || || |||||||| || |    
T  28110431 acatttatataaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcccaacttaaaataaaatcaattttaaa 28110530  T
Q  251 gacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
     ||| ||||||||  |||  | |||||| ||||||||  |||||||||||| ||||||  ||||||||||    
T  28110531 tacagaatcaattcaaatggacaacaacgaaacatatatgaatcaattcta-acctccggaatcaattat 28110599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 38845550 - 38845441
Alignment:
Q  138 atttatgtttggatacattcatgtaaaa-gtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagt 235  Q
    |||| |||||||||| |||||||||||| ||||||| || |||| |||| | ||| |||||||||| |||| ||||||  |||||||| || | ||||||    
T  38845550 atttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagt 38845451  T
Q  236 ataatcaatt 245  Q
    | ||||||||    
T  38845450 agaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 10898825 - 10898762
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatta 203  Q
    ||||||||||||||  |||||||||||||||||||||  |||||||| | ||| |||||||||||    
T  10898825 tttatgtttggatag-ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatta 10898762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 39097347 - 39097267
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||| ||| |||| ||||||||||  |||||| | ||||||||| ||| ||||||||||||| | | |||||||||||||    
T  39097347 tgttttgattcatttatgtaaaagtaggttgaactttaaatttatgtgtgaaaatcaattatataattaaaagttacaaat 39097267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 11577599 - 11577637
Alignment:
Q  137 aatttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  11577599 aatttgtgtttggatgcattcatgtaaaagtgagttgaa 11577637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 6949726 - 6949673
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatta 203  Q
    ||||||| || ||||||||||||| ||||||||||||| | | |||||||||||    
T  6949726 atacatttatataaaagtgagttggattataaatttatgtatgaaaatcaatta 6949673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 11648171 - 11648005
Alignment:
Q  153 cattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtataatcaattatagag 251  Q
    ||||||||||||| ||||||||||||||  ||  | ||| |||||||||| || | ||||||  |||||||| || || |||||| |||||||| || |     
T  11648171 cattcatgtaaaattgagttgaattata--ttcgtgtgtgaaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaattttaaat 11648074  T
Q  252 acataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
     |||||| ||||  | || | | ||| ||||||| ||| |||||||| || ||| ||||||||||||||    
T  11648073 gcataataaattctactcgacagcaatcaaacatgtcaaaatcaattatacaccaccaaaatcaattat 11648005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 12208814 - 12208859
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||||    
T  12208814 ttatgttttgatacattcatgtaaaagtgggttgaaaaataaattt 12208859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 36927666 - 36927699
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagt 171  Q
    |||||||||||||||||||| |||||||||||||    
T  36927666 atttatgtttggatacattcctgtaaaagtgagt 36927699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 38265106 - 38265061
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaa 116  Q
    |||||||||||||| |||  ||||||||||||||||||| ||||||    
T  38265106 aattgattttgataaaattgattttgtagaattgattttggttaaa 38265061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 42529552 - 42529519
Alignment:
Q  174 aattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||| |||||||||||||||||||||    
T  42529552 aattataaatttttatgttaaaatcaattataga 42529519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 4306618 - 4306570
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattta 186  Q
    ||||||||||||||||||||||||||||  || |||||  |||||||||    
T  4306618 atttatgtttggatacattcatgtaaaaaagaattgaacaataaattta 4306570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 6806381 - 6806313
Alignment:
Q  232 aagtataatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattct 300  Q
    ||||| |||||||| || || || |||||||| || |||| || |||||||||| ||||||||||||||    
T  6806381 aagtagaatcaattctaaaggcagaatcaatttcactcaagaataaccaaacatgtcagaatcaattct 6806313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 318
Target Start/End: Complemental strand, 35065169 - 35064988
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| ||||||||||||||||||||||||||||| ||  ||||||||| | ||| |||||||||| |||| |||||||| ||||||  || | |||||||    
T  35065169 atttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagta 35065070  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
     |||||||||| ||| || ||||||||  | || | | |||||||| || ||| ||||||||||| ||||||| ||||||||    
T  35065069 aaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgtcataatcaattctacacctccataatcaatt 35064988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 8604601 - 8604710
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||||||||||||||||||||||||||||||  || || ||||||||| | ||| |||||||||| |||| || |||| |||||||| || | |||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagta 8604700  T
Q  237 taatcaatta 246  Q
     |||||||||    
T  8604701 gaatcaatta 8604710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 32818354 - 32818434
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| | ||  |||||||||| |||| ||||||| |||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaat 32818434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 53713538 - 53713626
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||||| |||||||| |||||||||||||||||||||||| |||| || | |||||  || ||||||||||| ||||||| ||||||||    
T  53713538 taatttgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatc 53713626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 145 - 299
Target Start/End: Original strand, 53913563 - 53913718
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaa 243  Q
    |||| ||||||| |||| | |||||||| || ||||||||||| ||| ||||||||||||||| ||| || | | |||||||||| | ||||| ||||||    
T  53913563 tttgcatacatttatgttatagtgagtttaactataaatttatgtgtgaaaatcaattatagaatcacaaatgataaatcatatctttaagtaaaatcaa 53913662  T
Q  244 ttatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattc 299  Q
    ||||| || || ||||||||  | || | ||||| ||||||| || ||||||||||    
T  53913663 ttataaaggcaaaatcaattctactcgacaacaaacaaacatgtcggaatcaattc 53913718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 321
Target Start/End: Complemental strand, 33456478 - 33456296
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata-tctcaagta 236  Q
    ||||||||||| |||| ||  ||||||||||| ||||| |||| |||||| ||  ||||||||||||||| ||||||| ||||||||||| | | || ||    
T  33456478 atttatgtttgaatacttttgtgtaaaagtgaattgaactatagatttatgtg--aaaatcaattatagaatcaaaagctacaaatcatagttttaaata 33456381  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattata 321  Q
     ||| |||| |||||||  ||||||||  | || | | |||| ||| || ||| ||||||||||| || | ||||||||||||||    
T  33456380 gaataaattctagagacggaatcaattctagtcgacaccaacaaaatatgtcataatcaattctacacattcaaaatcaattata 33456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 45011974 - 45011894
Alignment:
Q  144 gtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    ||||| |||||||||| |||||||||||  |||||||||||| | ||| |||||||||| |||| ||||||| ||||||||    
T  45011974 gtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatc 45011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 52965854 - 52965910
Alignment:
Q  159 tgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||    
T  52965854 tgtaaaagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaag 52965910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 21691191 - 21691277
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||||||||| ||||||||||||||| |||||| ||||||||| | ||| |||||||||| || |  |||||| ||||||||    
T  21691191 atttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatc 21691277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 39386723 - 39386578
Alignment:
Q  154 attcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagaga 252  Q
    |||||||||||||||||||||| | ||||| | | ||| ||||||||||||||| | ||| |||| ||||  || | | ||||| |||||||| ||||||    
T  39386723 attcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaattttagaga 39386624  T
Q  253 cataatcaattacaatcaataacaaccaaacatatcagaatcaatt 298  Q
    || ||||||||  | |    ||||||||||||||||| ||||||||    
T  39386623 cagaatcaattctacttgtcaacaaccaaacatatcataatcaatt 39386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 55927743 - 55927796
Alignment:
Q  132 aatgtaatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||| |||||||||||||||||||||||||||||||| |||||  ||||||||    
T  55927743 aatgtgatttatgtttggatacattcatgtaaaagtgacttgaacaataaattt 55927796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 43868235 - 43868183
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaat 197  Q
    |||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  43868235 tttggatacatttatgtaaaagtgacttaaattataaatttatatgtaaaaat 43868183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 44278954 - 44279010
Alignment:
Q  146 ttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||||||||||||||||||| ||| |||||||| |||||||| ||||| ||||||||    
T  44278954 ttggatacattcatgtaaaaatgatttgaattaaaaatttatgtgttagaatcaatt 44279010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 16552053 - 16552014
Alignment:
Q  146 ttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaattt 16552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 22683969 - 22683806
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaag-ta 236  Q
    |||||||||||| ||||| ||||||||| ||||||||  ||||||||  |||| |||||||  | |||| ||||||| |||| |||||| | ||||| ||    
T  22683969 tttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagtta 22683870  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattct 300  Q
    |||| |||| | ||| || ||||||||  | |||| ||||| | ||||| ||| ||||||||||    
T  22683869 taattaattctggaggcaaaatcaattttactcaaaaacaaaccaacatgtcaaaatcaattct 22683806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 16644083 - 16644008
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaa 214  Q
    ||||||||||| |||||||||| ||| ||||| ||| || ||| |||||||||| |||||||||| |||| ||||||    
T  16644083 atttatgtttgaatacattcatataatagtgaattg-atgatatatttatatgtaaaaatcaattctagaatcaaaa 16644008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 42694502 - 42694557
Alignment:
Q  149 gatacattcatgtaaaagtgagttgaattataaattta--tatgttaaaatcaatt 202  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||||    
T  42694502 gatatattcatgtaaaagtgagttgaattataaatgtatgtatgttagaatcaatt 42694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 45694715 - 45694651
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||||||||||||||| |||||| || ||||||| | | ||||| |||||||| ||||    
T  45694715 tgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctaga 45694651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 1616561 - 1616515
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaa 117  Q
    |||||||||||||| |||  ||||||||||||||||||| |||||||    
T  1616561 aattgattttgatagaattgattttgtagaattgattttggttaaaa 1616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 5025632 - 5025582
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||||  |||  |||||||||||||||||||||||| ||||    
T  5025632 aaaattgattttgattgaattgattttgtagaattgattttagttagaagt 5025582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 33843817 - 33843771
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatt 184  Q
    ||||||||||||||| |||||||||| |||||||||||  |||||||    
T  33843817 atttatgtttggatatattcatgtaatagtgagttgaacaataaatt 33843771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 39000530 - 39000580
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||||  |||  ||||||||||||||| |||||||||||||    
T  39000530 aaaattgattttgattgaattgattttgtagaattgagtttagttaaaagt 39000580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 2326928 - 2326973
Alignment:
Q  275 caaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    ||||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattat 2326973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 21691335 - 21691380
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    |||||||||| || ||||||||||||||| ||||||| ||||||||    
T  21691335 aacaaccaaatatgtcagaatcaattctacacctccagaatcaatt 21691380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 26911798 - 26911855
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||||| || || ||||||||| |||||  ||||||||| ||||    
T  26911798 atacattcatgtaaaagtgaattaaactataaatttgtatgtggaaatcaattctaga 26911855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 298
Target Start/End: Original strand, 39733619 - 39733777
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatctcaagtat 237  Q
    |||| |||||||||||||| ||| ||||  |||||||| | ||||  | | ||| | |||||||| || | ||||||| |||||||  || ||||||||     
T  39733619 atttgtgtttggatacatttatgaaaaaaggagttgaactttaaa--tgtgtgtgataatcaattctacaatcaaaagctacaaattgtaactcaagtag 39733716  T
Q  238 aatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaatt 298  Q
    |||||||||| ||| || ||| ||||| | |  |||||||| ||| || ||||||||||||    
T  39733717 aatcaattatggaggcagaataaattatacttgataacaacaaaatatgtcagaatcaatt 39733777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 47144320 - 47144251
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||||||| ||||||| ||||| |  ||||||||    || |||||||||||||||    
T  47144320 atttatgtttggatacattcatctaaaagttagttggacaataaattttagcgtaaaaatcaattataga 47144251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 49138950 - 49138995
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||||||||||| ||||||||||||||| ||||| | ||||||||    
T  49138950 aacaaccaaacatgtcagaatcaattctacacctctagaatcaatt 49138995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 30357579 - 30357491
Alignment:
Q  177 tataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagagacataatcaatta 264  Q
    ||||||||| | ||| ||||||||||||| | ||||||| ||||||||| | | ||||||| |||||||| || ||| | |||||||||    
T  30357579 tataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattctaaagataaaatcaatta 30357491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 33347147 - 33347235
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||||| |||||| ||||| |||||||||||||| ||||| |||| |||| | ||  ||||| |||||| || | |||| |||||||||    
T  33347147 taatttttgtttgaatacaatcatgtaaaagtgaattgaactatatatttgtgtgcaaaaattaattatcgaataaaaaattacaaatc 33347235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 47297985 - 47298025
Alignment:
Q  167 tgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||| |||| |||||||||| |||||||||||||||    
T  47297985 tgagttgaactatacatttatatgtaaaaatcaattataga 47298025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 52342065 - 52342025
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||||| |||||| |||||||||||||||| |||||||||    
T  52342065 gtaatttgtgtttgaatacattcatgtaaaaatgagttgaa 52342025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 31930 - 31751
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttg---aattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtata 238  Q
    |||||||||||||| ||||||||||||||||   || ||||||| | ||||| ||||||||||  | | ||||||| |||||||| || || ||||||||    
T  31930 tgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagtata 31831  T
Q  239 atcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    ||||||| | ||| || ||||||||  | || | ||||||||||||| ||||||||||||||| ||||| | ||||||||    
T  31830 atcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaatt 31751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 31708223 - 31708303
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||| ||||||| |||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 31013124 - 31013039
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||| | ||||| |||||||| |||||||||| | |||||||    
T  31013124 atttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaat 31013039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 40147832 - 40147906
Alignment:
Q  141 tatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |  |||| ||||||||| |||| |||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaag 40147906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 35264392 - 35264467
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    |||||||||| ||||||||||||||| ||| |||||  |||||||||  |||||||||||||| |||| |||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaag 35264467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 52364137 - 52364068
Alignment:
Q  158 atgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcata 227  Q
    |||||||||||||||||| | ||||||||| | | ||||||||||||||| ||||||| || ||||||||    
T  52364137 atgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcata 52364068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 43661947 - 43661883
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaa 200  Q
    ||||||||||||  ||||||||||||||||||||||||||  ||| |||||| ||| ||||||||    
T  43661947 taatttatgtttttatacattcatgtaaaagtgagttgaacaatacatttatgtgtgaaaatcaa 43661883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 44225689 - 44225633
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||| |||||||||||| |||||||  ||||||||||||||||||| |||||||||    
T  44225689 gtggagaaaattgattttaatataattgattttgtagaattgattttcgttaaaagt 44225633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 4526224 - 4526153
Alignment:
Q  152 acattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||| ||||||||||| |||||| ||||||||| | ||| |||||||||| || | |||||||||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaaat 4526153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 39054105 - 39054159
Alignment:
Q  169 agttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||||||||||||||||||||||||||| |||| | |||||||| ||||    
T  39054105 agttaaattataaatttatatgttaaaatcaattctagaattaaaagttataaat 39054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 46853513 - 46853603
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatat 228  Q
    ||||||||  ||||| ||| ||||||||||||||||||  ||||||||   |||||||||||||| |||| ||||||| | | ||||||||    
T  46853513 atttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccgaatcatat 46853603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 33791984 - 33792061
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgag-ttgaattataaatttatatgttaaaatcaattatagattcaaaa 214  Q
    |||| |||||||||| ||||||||||||||||| || ||  |||||||||| ||| ||||||||||||| | ||||||    
T  33791984 atttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaaatcaattataaaatcaaaa 33792061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 35253446 - 35253515
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||| |||||| ||| ||||||||||||||||||||| ||||||||   ||| |||||||||| ||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctaga 35253515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 53078476 - 53078431
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagtta 114  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||    
T  53078476 aaaattgattttgattgaattaattttgtagaattgattttagtta 53078431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 54173314 - 54173363
Alignment:
Q  158 atgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||| ||||||||||| ||| ||||| |||||||||    
T  54173314 atgtaaaagtgagttgaactataaatttatttgtaaaaattaattataga 54173363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 36302285 - 36302225
Alignment:
Q  142 atgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||| ||||| |||||||||||||||||||||||  |||||||||  || |||||||||||    
T  36302285 atgtgtggattcattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaatt 36302225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 4401350 - 4401397
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaattataaa 182  Q
    ||||||||||| | ||||||||||||||||| | ||||||||||||||    
T  4401350 gtaatttatgtatagatacattcatgtaaaaataagttgaattataaa 4401397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 5407008 - 5406973
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||||||||||||||||||||||| |||||    
T  5407008 ttatgtttggatacattcatgtaaaagtgatttgaa 5406973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 49356370 - 49356457
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||||||||||  ||| ||| |||||| |||  ||| ||  |||||||||| ||| ||||||||||||||| || ||||||||||||    
T  49356370 taatttatgtttaaatatatttatgtaagagtaggttaaaccataaatttatttgtaaaaatcaattatagaatctaaagttacaaat 49356457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 7262919 - 7262885
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttg 173  Q
    ||||||||| |||||||||||||||||||||||||    
T  7262919 tttatgttttgatacattcatgtaaaagtgagttg 7262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 21261223 - 21261273
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagtaa 121  Q
    |||||||||||||| |||  ||| ||||||||||||||| |||||||||||    
T  21261223 aattgattttgataaaattgattatgtagaattgattttggttaaaagtaa 21261273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 46551244 - 46551294
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||| |||||| |||||||||| ||||||||||||||  |||||||||    
T  46551244 gtaatttttgtttgaatacattcatataaaagtgagttgagctataaattt 46551294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 52141361 - 52141407
Alignment:
Q  274 acaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    ||||| ||||||||||||||| |||||| ||||| ||||||||||||    
T  52141361 acaactaaacatatcagaatctattctacacctcaaaaatcaattat 52141407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 30958142 - 30958105
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30958142 atttatgtttggatatattcatgtaaaagtgaattgaa 30958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 30973954 - 30973917
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30973954 atttatgtttggatatattcatgtaaaagtgaattgaa 30973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 41591332 - 41591361
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagt 167  Q
    ||||||||||||||||||||||||||||||    
T  41591332 atttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 31130038 - 31130070
Alignment:
Q  140 ttatgtttggatacattcatgtaaaagtgagtt 172  Q
    ||||||||| |||||||||||||||||||||||    
T  31130038 ttatgtttgaatacattcatgtaaaagtgagtt 31130070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 31492870 - 31492788
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||| |||||||||||| || |||||  || ||||||||||||||| | |||| ||||||||| |||| ||||||| |||||||    
T  31492870 tttatatttggatacattaatataaaataga-ttgaattataaatttgtgtgtt-aaatcaattctagaatcaaaagctacaaat 31492788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 41596128 - 41596192
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||| |||||||||||||||||| ||||||||||  || |||||| || | ||| ||||||||||    
T  41596128 atttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaatt 41596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 38797609 - 38797734
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    ||||||||||| ||||||| || ||||||||||||||| ||||||||| | ||| |||||||||| | |||| | ||||||||||||||| | |||||||    
T  38797609 atttatgtttgcatacatt-atttaaaagtgagttgaactataaatttgtgtgtgaaaatcaattcttgatttagaagttacaaatcataacttcaagta 38797707  T
Q  237 taatcaattatagagacataatcaatt 263  Q
    ||||||||||  ||| ||||| |||||    
T  38797708 taatcaattaaggaggcataaccaatt 38797734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 138 - 301
Target Start/End: Original strand, 28083867 - 28084031
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||||||| ||||||||||||||||| |||| |  |||||| | ||| ||||| ||||||||| ||||||| |||||||  || | |||||||    
T  28083867 atttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagta 28083966  T
Q  237 taatcaattatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattcta 301  Q
     |||||||||   ||||| ||||||||  | || | |||||||||| || |||||||||||||||    
T  28083967 gaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattcta 28084031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 34915172 - 34915088
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaa 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |  | ||||| |||||||| |||| ||||||| ||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaa 34915088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 3016265 - 3016183
Alignment:
Q  141 tatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||||||||||||||||||||||||||||||||||   ||||||||| ||| || ||||||| |||| ||||||| |||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaat 3016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 1514450 - 1514326
Alignment:
Q  137 aatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagt 235  Q
    ||||| ||||||||||||||||||||||| |||||||||  |||||||| | ||| ||||||||||||| | | ||||| |||||||| || | ||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagt 1514351  T
Q  236 ataatcaattatagagacataatca 260  Q
    | ||| |||| | |||||| |||||    
T  1514350 agaataaattttggagacagaatca 1514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 7524219 - 7524133
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||||||| | ||| |||||||||| || | ||||||| ||||||||    
T  7524219 atttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatc 7524133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 2556000 - 2555943
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  2556000 tttggatgtattcatgtaaaagtgagttgaattataaatttgtatgttagaatcaatt 2555943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 11049347 - 11049270
Alignment:
Q  147 tggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||||||||||| |||||||||| ||||| ||||||||| | ||| |||||||||| |||| ||||||| ||||||||    
T  11049347 tggatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatc 11049270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 30850393 - 30850442
Alignment:
Q  153 cattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaatt 30850442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 322
Target Start/End: Original strand, 47321902 - 47322070
Alignment:
Q  154 attcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatct-caagtataatcaattatagaga 252  Q
    |||||||||||||||| ||||| ||||||||| | | | |||||||||| |||| | |||| |  |||||  || || ||||||||||||||||||||      
T  47321902 attcatgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaaactg-caaattctagcttcaagtataatcaattatagaag 47322000  T
Q  253 cataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattataa 322  Q
    || ||||||||  | || | |||||| |||||| ||| ||||||||||| ||||||| ||| ||||||||    
T  47322001 cagaatcaattctactcgacaacaacaaaacatgtcaaaatcaattctacacctccacaataaattataa 47322070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 30557674 - 30557524
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagtaannnnnnnnnaaatgtaatttatgtttggatacattcatgtaaaagtgag 170  Q
    |||||||||||||| |||  ||| ||||||||||||||| ||||||||| |          || || |||| ||||||||||||||||| ||||||||||    
T  30557674 aattgattttgatagaattgattctgtagaattgattttggttaaaagtgactctgactagaa-gtgatttgtgtttggatacattcatataaaagtgag 30557576  T
Q  171 ttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    ||||| ||||||||  | ||| |||||||||| |||| ||||||  ||||||||    
T  30557575 ttgaactataaatt--tgtgtgaaaatcaattctagaatcaaaaactacaaatc 30557524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 4347122 - 4347066
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||||||||||||||||| || |||  ||||||||||||||||||| |||||||||    
T  4347122 gtggaaaaaattgattttggtagaattgattttgtagaattgattttggttaaaagt 4347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 7790644 - 7790748
Alignment:
Q  161 taaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagagacataatc 259  Q
    |||||||||||||||  |||||||| | ||| ||||||||||||||| || |||  ||||||||||| | ||||||| |||||||| || |||||  |||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattctaaagacaatatc 7790743  T
Q  260 aatta 264  Q
    |||||    
T  7790744 aatta 7790748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 24588001 - 24587949
Alignment:
Q  155 ttcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||||||    
T  24588001 ttcatgtaaaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 35961474 - 35961427
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||    
T  35961474 atttatgtttctatacattcatgtaaaagtgagttgaattttaaattt 35961427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 36780232 - 36780279
Alignment:
Q  273 aacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  36780232 aacaaccaaacatatcaaaatcaattctacacctccataatcaattat 36780279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 37733611 - 37733678
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatta 203  Q
    ||||| ||||||| ||||||| ||||| || |||||||||| ||||||||| ||| ||||||||||||    
T  37733611 taattcatgtttgaatacatttatgtataaatgagttgaataataaatttaaatggtaaaatcaatta 37733678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 3416179 - 3416017
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaa 243  Q
    ||||||||||| ||| ||||| |||||| || ||||||||| | ||| |||||||||| || | | ||||  |||||||| || | | ||||||||||||    
T  3416179 tttggatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaagtataatcaa 3416080  T
Q  244 ttatagagacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacct 306  Q
    || ||||  | |||||||||  | ||||  |||| ||||||| |||||||||| |||| ||||    
T  3416079 ttttagatgcgtaatcaattctactcaacgacaatcaaacatctcagaatcaactctacacct 3416017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 213260 - 213297
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||||||||||| |||||||||||||||||||    
T  213260 atttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 18325087 - 18325132
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaat 183  Q
    |||||||| |||||||||||||||||||||| ||||||| ||||||    
T  18325087 atttatgtatggatacattcatgtaaaagtgggttgaataataaat 18325132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 28267900 - 28267957
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||| | |||||||||||||||||  |||||||| |||| ||||    
T  28267900 atacattcatgtaaaagtaacttgaattataaatttatgcgttaaaattaattctaga 28267957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 32370010 - 32370095
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||| ||||||||||||||||||||||||  |||| |||||||||||| | ||| ||||  |||| |||| | |||| ||||||||    
T  32370010 atttgtgtttggatacattcatgtaaaagcaagttcaattataaatttgtgtgtaaaaaataattctagaataaaaaattacaaat 32370095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 45660584 - 45660648
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    ||||||||||||||| | |||||||||||| ||||||||| || |||| | ||| ||||||||||    
T  45660584 atttatgtttggataaactcatgtaaaagtaagttgaattgtagatttgtgtgtaaaaatcaatt 45660648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 1416203 - 1416238
Alignment:
Q  141 tatgtttggatacattcatgtaaaagtgagttgaat 176  Q
    |||||||| |||||||||||||||||||||||||||    
T  1416203 tatgtttgaatacattcatgtaaaagtgagttgaat 1416238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 35548875 - 35548832
Alignment:
Q  158 atgtaaaagtgagttgaattataaatttatatgttaaaatcaat 201  Q
    ||||||||||||||||||| |||||||||  |||||||||||||    
T  35548875 atgtaaaagtgagttgaatgataaatttaagtgttaaaatcaat 35548832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 50569633 - 50569704
Alignment:
Q  149 gatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttaca 220  Q
    ||||||||||  ||||| ||  ||||| ||||||||| | ||| ||| ||||||||||||||||||||||||    
T  50569633 gatacattcaaataaaactggattgaactataaatttgtttgtgaaattcaattatagattcaaaagttaca 50569704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 10324926 - 10325000
Alignment:
Q  147 tggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    |||||||||| ||||||||||||||  ||  ||||||||   ||| ||||||||||||||| ||||||| |||||    
T  10324926 tggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaa 10325000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 14644792 - 14644718
Alignment:
Q  149 gatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    |||||||| |||||||||||||||||||| |||| |||  ||| |||||| |||||||  ||||||  |||||||    
T  14644792 gatacattgatgtaaaagtgagttgaattttaaaattacttgtaaaaatcgattataggatcaaaaactacaaat 14644718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 30557483 - 30557441
Alignment:
Q  276 aaccaaacatatcagaatcaattctatacctccaaaatcaatt 318  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaatt 30557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 34721826 - 34721888
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||| ||||||| |||||||||| ||| ||| ||||||||| | ||| |||||||||||||||    
T  34721826 tttgaatacattgatgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaattataga 34721888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 47053503 - 47053465
Alignment:
Q  145 tttggatacattcatgtaaaagtgagttgaattataaat 183  Q
    |||||||||||||||||||||||||||| || |||||||    
T  47053503 tttggatacattcatgtaaaagtgagttaaactataaat 47053465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 1233413 - 1233364
Alignment:
Q  136 taatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||||||| ||||||||||||| |||||||||| ||  ||||||||    
T  1233413 taatttatgtttagatacattcatgtgaaagtgagttcaacaataaattt 1233364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 2099666 - 2099731
Alignment:
Q  138 atttatgtttggatacattcatgtaaaag-tgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||| ||||||||||||||||| |||||  ||||||||  ||||||||||| ||| ||||||||||    
T  2099666 atttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatcaatt 2099731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 20720919 - 20720839
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    ||||||||||||| |||||   ||||||||||||||||  ||||||||   ||| |||||||||| |||| ||| |||||||||    
T  20720919 atttatgtttggacacatt---gtaaaagtgagttgaaggataaatttgattgtaaaaatcaattctagaatcataagttacaa 20720839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 24697577 - 24697614
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||||||||| || ||||||||||||||||||    
T  24697577 atttatgtttggatacgtttatgtaaaagtgagttgaa 24697614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 26373535 - 26373603
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaa 221  Q
    ||||||||||||||||||||| |||||| ||||||| |    ||||||||||| |||| ||||||| |||||    
T  26373535 atacattcatgtaaaagtgagatgaattttaaatttgt---gtaaaatcaattctagaatcaaaagctacaa 26373603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 48548993 - 48549030
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaa 48549030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 13344913 - 13344865
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||  |||  ||||||||||||||||||| |||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagt 13344865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 27962095 - 27962143
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattta 186  Q
    |||||||||||||||||||| | ||||| | ||||||| ||||||||||    
T  27962095 atttatgtttggatacattcgtataaaaattagttgaactataaattta 27962143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 36447660 - 36447700
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgatttt 109  Q
    |||||||||||||||  ||| ||||||||||||||||||||    
T  36447660 aaaattgattttgattgaattaattttgtagaattgatttt 36447700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 40352531 - 40352483
Alignment:
Q  71 aattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    |||||||||||||| |||  ||||||| ||||||||||| |||||||||    
T  40352531 aattgattttgatagaattgattttgtggaattgattttggttaaaagt 40352483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 52263625 - 52263673
Alignment:
Q  137 aatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||||||||||||||||||| |||||||| |||||| ||  ||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaattt 52263673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 315
Target Start/End: Original strand, 28724963 - 28725209
Alignment:
Q  69 aaaattgattttgatataatcaattttgtagaattgattttagttaaaagtaannnnnnnnnaaatgtaatttatgtttggatacattcatgtaaaagtg 168  Q
    |||||| |||||||||||||| ||| |||||| ||||||||||||||||||||         |||  |||||| ||||| |||||||  ||||||||||     
T  28724963 aaaatttattttgatataatcgattatgtagagttgattttagttaaaagtaattctaactaaaa-ataatttgtgtttagatacatctatgtaaaagta 28725061  T
Q  169 agttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaattatagagacataatcaattacaa 267  Q
    || |||| | ||||| ||  ||| | ||||||||||||| ||||||| |||||||  || | |||||||||||||||  | ||| |  ||||||||  ||    
T  28725062 agctgaactttaaatatacgtgtgagaatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaatattggaggctgaatcaattctaa 28725161  T
Q  268 tcaataacaaccaaacatatcagaatcaattctatacctccaaaatca 315  Q
     | | ||||||||||||| ||  ||||||||||| | ||| |||||||    
T  28725162 acgaaaacaaccaaacatgtctaaatcaattctacatctcaaaaatca 28725209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 22195970 - 22195844
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagta 236  Q
    |||| |||||||||||||  |||||||||||| || || ||||||| |  |||| |||||||||| |||| ||||||||||||||||||| | | |||||    
T  22195970 atttgtgtttggatacatgaatgtaaaagtgaattaaactataaatatgcatgtgaaaatcaattttagaatcaaaagttacaaatcatagcttaaagta 22195871  T
Q  237 taatcaattatagagacataatcaatt 263  Q
     |||||||| |   |||||||||||||    
T  22195870 aaatcaattttgaggacataatcaatt 22195844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 42816452 - 42816533
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| | ||| |||||||||| |||| | |||||||| |||||    
T  42816452 tgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 40491684 - 40491600
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaa 222  Q
    |||||| |||||||||||||||||||||||||||| || | ||||||| | ||| ||| |||||| |||| ||||||| ||||||    
T  40491684 atttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaa 40491600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 39956325 - 39956266
Alignment:
Q  146 ttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattata 205  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||| || ||||||||||    
T  39956325 ttggatacattcacataaaagtgagttgaattataaatttatgtgtgaagatcaattata 39956266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 25156306 - 25156237
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||| |||||| |||||||||| |||||||||||||| |||| ||||||| ||| |||||||||| ||||    
T  25156306 atttgtgtttgaatacattcatataaaagtgagttgatttattaatttatgtgtaaaaatcaattctaga 25156237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 27571968 - 27571891
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaag 215  Q
    ||||||| ||||||||||| ||||||| ||||||||||| ||||| ||   |||||||||||||| |||| |||||||    
T  27571968 atttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaag 27571891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 40561737 - 40561774
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaa 175  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40561737 atttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 40795969 - 40796032
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaatt 202  Q
    |||||| |||||||||||||||||||||||| ||||||  |||||||   ||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaatt 40796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 41386811 - 41386902
Alignment:
Q  155 ttcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatcatatc-tcaagtataatcaatt 245  Q
    |||||| |||||||||||||||||||||||| | ||| || ||||||| |||| | ||||| |||||||| || | ||||||| ||||||||    
T  41386811 ttcatgcaaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaatt 41386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 41788422 - 41788343
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagtt 217  Q
    ||||||||||| ||||||| || |||||||||||||||    ||||||   ||||||||||||||||||| |||||||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtt 41788343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 45557471 - 45557408
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaat 201  Q
    |||| ||||||||||||||||||||||||||||||||  || |||||| | ||| |||||||||    
T  45557471 atttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaat 45557408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 32295278 - 32295228
Alignment:
Q  150 atacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaa 200  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| ||||||    
T  32295278 atacatttatgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 35772356 - 35772278
Alignment:
Q  146 ttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    ||||||||||| || ||||||| | ||||||||||||||||| ||| |||||||||| || | ||||||  ||||||||    
T  35772356 ttggatacatttatataaaagtaaattgaattataaatttatttgtgaaaatcaattctaaaatcaaaaactacaaatc 35772278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 31625616 - 31625560
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaagt 119  Q
    ||||||| ||| |||||||||| ||| |||| ||||||||||||||| |||||||||    
T  31625616 gtggaaataatcgattttgatagaattaattctgtagaattgattttggttaaaagt 31625560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 32683662 - 32683582
Alignment:
Q  143 tgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaat 223  Q
    ||||| ||||||| | |||||||||||||| |||||||||||||| ||  |||||||||| ||   ||||||| |||||||    
T  32683662 tgtttagatacatccgtgtaaaagtgagttaaattataaatttatgtgggaaaatcaattctaatatcaaaagctacaaat 32683582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 17111951 - 17111904
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    |||| ||||||||| ||||||||||||| ||||| |||||||||||||    
T  17111951 atttgtgtttggatgcattcatgtaaaaatgagtagaattataaattt 17111904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 9480585 - 9480635
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaattataaattt 185  Q
    ||||||| || ||| |||||||||| |||||||||||| ||||||||||||    
T  9480585 gtaatttgtgattgaatacattcatttaaaagtgagttaaattataaattt 9480635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 12306829 - 12306791
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaat 176  Q
    |||||||||||| || |||||||||||||||||||||||    
T  12306829 atttatgtttggctagattcatgtaaaagtgagttgaat 12306791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 29163487 - 29163417
Alignment:
Q  250 agacataatcaattacaatcaataacaaccaaacatatcagaatcaattctatacctccaaaatcaattat 320  Q
    ||||| ||||||| | | |||| |||||  |||||| |||| |||||||||| ||||||||||||||||||    
T  29163487 agacagaatcaatcatactcaacaacaattaaacatgtcaggatcaattctacacctccaaaatcaattat 29163417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 32683748 - 32683694
Alignment:
Q  63 gtggaaaaaattgattttgatataatcaattttgtagaattgattttagttaaaa 117  Q
    |||| ||||||||||||||||  |||  ||| |||||||||||||||||||||||    
T  32683748 gtgggaaaaattgattttgattgaattgattatgtagaattgattttagttaaaa 32683694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 41010065 - 41010035
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaa 165  Q
    |||||||||||||||||||||||||||||||    
T  41010065 gtaatttatgtttggatacattcatgtaaaa 41010035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 22310438 - 22310507
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||||||||||||||||  |||||||||| |||||  |||||||||  ||| ||||| |||| ||||    
T  22310438 atttatgtttggatacattctcgtaaaagtgaattgaaaaataaatttaagtgtaaaaattaattctaga 22310507  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 525980 - 526032
Alignment:
Q  144 gtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaa 196  Q
    ||||| ||| ||||| ||||||||||||||||| ||||||||| |||| ||||    
T  525980 gtttgaatatattcaggtaaaagtgagttgaataataaatttaaatgtaaaaa 526032  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 33853463 - 33853491
Alignment:
Q  138 atttatgtttggatacattcatgtaaaag 166  Q
    |||||||||||||||||||||||||||||    
T  33853463 atttatgtttggatacattcatgtaaaag 33853491  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 38123642 - 38123714
Alignment:
Q  135 gtaatttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    ||||||| |||| ||| |||||||||||||||||||||||   ||||||||   ||| |||||||||| ||||    
T  38123642 gtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctaga 38123714  T

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Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 14093 - 14162
Alignment:
Q  138 atttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattataga 207  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||   ||| |||||||||| ||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctaga 14162  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 23573 - 23658
Alignment:
Q  139 tttatgtttggatacattcatgtaaaagtgagttgaattataaatttatatgttaaaatcaattatagattcaaaagttacaaatc 224  Q
    |||||||| |||| |||| | ||||||||||||||||| ||||||||   | | |||||||  | |||||||||||| ||||||||    
T  23573 tttatgttaggatgcatttaagtaaaagtgagttgaatgataaattttagtctaaaaatcacgtctagattcaaaagctacaaatc 23658  T

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