View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17692_high_5 (Length: 314)
Name: NF17692_high_5
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17692_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 6257947 - 6258062
Alignment:
| Q |
1 |
ataatagaaataaattaaaaacataatgtaaacataagagaaacagttgtcacacaagttgtcataaaatagtataaatatcatttctcctttcaaaatt |
100 |
Q |
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| T |
6257947 |
ataatagaaagaaattaaaaatataatgtaaacataagagaaacagttgtcacaaaagttgtcataaaataatataaatatcatttctcctttcaaaatt |
6258046 |
T |
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| Q |
101 |
aacattcagggtgaaa |
116 |
Q |
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|||||| ||||||||| |
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| T |
6258047 |
aacattaagggtgaaa |
6258062 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 6258115 - 6258175
Alignment:
| Q |
171 |
aataatatgtcccaaacaaaggttcgtgtcaattttaggtaatatagcacatgataaacaa |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6258115 |
aataatatgtcccaaacaaaggttcgtgtcaattttaggtaatatagcacatgataaacaa |
6258175 |
T |
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