View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17692_low_10 (Length: 210)

Name: NF17692_low_10
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17692_low_10
NF17692_low_10
[»] chr4 (33 HSPs)
chr4 (14-183)||(48147257-48147414)
chr4 (43-183)||(48155996-48156130)
chr4 (111-182)||(7790441-7790512)
chr4 (111-182)||(7908663-7908734)
chr4 (112-183)||(48864395-48864466)
chr4 (121-183)||(7878743-7878805)
chr4 (43-183)||(45365787-45365921)
chr4 (99-183)||(49043785-49043869)
chr4 (53-183)||(45371651-45371775)
chr4 (121-183)||(7773464-7773526)
chr4 (111-174)||(7771764-7771827)
chr4 (56-182)||(47208238-47208358)
chr4 (111-174)||(50666684-50666747)
chr4 (112-182)||(7813838-7813908)
chr4 (110-183)||(45384520-45384593)
chr4 (122-183)||(49038518-49038579)
chr4 (118-182)||(7786825-7786889)
chr4 (52-183)||(48853041-48853166)
chr4 (112-182)||(7800998-7801068)
chr4 (133-182)||(48903316-48903365)
chr4 (118-174)||(7237379-7237435)
chr4 (118-182)||(7766003-7766067)
chr4 (111-183)||(48863625-48863697)
chr4 (111-173)||(37826619-37826681)
chr4 (44-183)||(49048123-49048256)
chr4 (111-183)||(49040781-49040853)
chr4 (102-169)||(48735031-48735098)
chr4 (111-182)||(48870921-48870992)
chr4 (111-182)||(48876225-48876296)
chr4 (111-182)||(48886607-48886678)
chr4 (112-180)||(7823332-7823400)
chr4 (134-182)||(48861649-48861697)
chr4 (38-86)||(49040720-49040768)
[»] chr5 (3 HSPs)
chr5 (115-184)||(42561966-42562035)
chr5 (139-183)||(179418-179462)
chr5 (124-183)||(9120123-9120182)
[»] chr3 (5 HSPs)
chr3 (108-182)||(11005554-11005628)
chr3 (43-183)||(47451467-47451601)
chr3 (38-183)||(11015053-11015192)
chr3 (112-182)||(11024133-11024203)
chr3 (38-83)||(11024065-11024110)
[»] chr1 (7 HSPs)
chr1 (121-174)||(24323139-24323192)
chr1 (122-183)||(24416138-24416199)
chr1 (121-183)||(24340771-24340833)
chr1 (121-183)||(24353136-24353198)
chr1 (122-174)||(24367534-24367586)
chr1 (124-183)||(24310576-24310635)
chr1 (112-154)||(24369830-24369872)
[»] chr8 (9 HSPs)
chr8 (16-91)||(4030328-4030403)
chr8 (134-183)||(4031578-4031627)
chr8 (111-182)||(15349244-15349315)
chr8 (146-188)||(4962183-4962225)
chr8 (113-183)||(12195684-12195754)
chr8 (113-183)||(12440112-12440182)
chr8 (52-88)||(4962095-4962131)
chr8 (52-88)||(12200788-12200824)
chr8 (52-88)||(12445216-12445252)
[»] chr7 (2 HSPs)
chr7 (120-183)||(48884184-48884247)
chr7 (136-174)||(30130916-30130954)
[»] chr6 (3 HSPs)
chr6 (136-174)||(14197337-14197375)
chr6 (38-183)||(21016181-21016320)
chr6 (138-179)||(21979284-21979325)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 48147257 - 48147414
Alignment:
Q  14 ttatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccat 113  Q
    |||||||||||||||||| |||| ||||||||| ||| ||| |||||||||||||| |||||||| |||||||||||            |||| ||||||    
T  48147257 ttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaagta------------gggaatgccat 48147344  T
Q  114 caataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||  | |  |||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  48147345 caatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 48155996 - 48156130
Alignment:
Q  43 tgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaa 142  Q
    |||| ||||||| |||||| |||||||||||||||||||| ||||| |  |||    |||   | |||||||||||||||| ||||||| ||||||||||    
T  48155996 tgttccaacaatgtcaccattttttgtagagcatattgggtaaaagga--aag----agtataaatgccatcaataggaaggacaagagttttagtccaa 48156089  T
Q  143 gatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    || ||||||||||||||||| ||||||||||| ||||||||    
T  48156090 gaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 7790512 - 7790441
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 7908734 - 7908663
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7908734 catcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 7878805 - 7878743
Alignment:
Q  121 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaac 7878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 45365787 - 45365921
Alignment:
Q  43 tgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaa 142  Q
    |||| ||| ||||||||| ||||||||||||||||  |||||||||||        |||||||| |||||||||||||||||||  |||  || ||||||    
T  45365787 tgttccaataatatcaccgctttttgtagagcataaaggggaaaagtatt------gagtgggaatgccatcaataggaagaacgtgagtctttgtccaa 45365880  T
Q  143 gatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    || ||| ||||||| ||||||||||||||||| ||||||||    
T  45365881 gacgaacgcactttatattctttcatcacccatatttcaac 45365921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 49043785 - 49043869
Alignment:
Q  99 gagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||| || ||||||||| || ||||||||  |||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  49043785 gagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 45371651 - 45371775
Alignment:
Q  53 atatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgca 152  Q
    |||||||| ||||||||| | || | ||||||||||||||      |||| |||  |||||| ||||||||||||| ||  ||||||||||| |||||||    
T  45371651 atatcaccgctttttgtacaacacaatggggaaaagtacc------gagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgca 45371744  T
Q  153 ctttgtattctttcatcacccaaatttcaac 183  Q
    |||||||||||||||| ||||| ||||||||    
T  45371745 ctttgtattctttcataacccatatttcaac 45371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 7773464 - 7773526
Alignment:
Q  121 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaac 7773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 7771827 - 7771764
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    |||||| || ||||||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  7771827 catcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcaccca 7771764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 47208358 - 47208238
Alignment:
Q  56 tcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactt 155  Q
    ||||||||||||||||| |||||||||  ||||||||      ||| |||  || |||||| || ||||| |||| |||||||||||||||| || ||||    
T  47208358 tcaccactttttgtagaacatattgggataaagtacc------gagaggggttgacatcaagagaaagaataagaactttagtccaagatgattgtactt 47208265  T
Q  156 tgtattctttcatcacccaaatttcaa 182  Q
    ||||||||||||||||||  |||||||    
T  47208264 tgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 50666747 - 50666684
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    |||||||  ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  50666747 catcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcaccca 50666684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||| || ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||| |||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 45384520 - 45384593
Alignment:
Q  110 ccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||| |||||||||| |||  || |||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  45384520 ccatcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  122 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 7786889 - 7786825
Alignment:
Q  118 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||||||||  ||| |||||||| ||||||| |||||||||||||||||||| |||||||    
T  7786889 aggaagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 48853166 - 48853041
Alignment:
Q  52 aatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgc 151  Q
    |||||||||||| |||||| | |||||||||||||||||   ||||||| ||| | |      || || |||||||||||  ||||||||||| ||| ||    
T  48853166 aatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaact------aaaagaaagaacaagagtcttagtccaagacgaacgc 48853073  T
Q  152 actttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||||||||| ||||| ||||||||    
T  48853072 actttgtattctttcatgacccatatttcaac 48853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||| || ||||||||||| |||| ||||||| |||||||||||||| ||||||| |||||| |||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 48903365 - 48903316
Alignment:
Q  133 tttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  48903365 tttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 7237379 - 7237435
Alignment:
Q  118 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    |||||| ||||||| |||||||||| | ||||||| |||||||||||||||||||||    
T  7237379 aggaagcacaagagttttagtccaaaacgaatgcattttgtattctttcatcaccca 7237435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 7766067 - 7766003
Alignment:
Q  118 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||||||||| |  |||||||| || |||| |||||||||||||||||||||||| |||||||    
T  7766067 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 48863697 - 48863625
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||  |||||||| ||||||||| || |||||    
T  48863697 catcaatagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaac 48863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 37826619 - 37826681
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccc 173  Q
    |||||||  ||| ||||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  37826619 catcaatccgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 49048123 - 49048256
Alignment:
Q  44 gttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaag 143  Q
    ||||||| |||||||||||||||||||  ||||||||| || |||   ||| ||||  ||||| || ||||| ||| || ||||| ||  |||||||| |    
T  49048123 gttgcaataatatcaccactttttgtacggcatattggagagaag---caa-tggg--tgggaatgacatcagtagaaaaaacaaaagtcttagtccatg 49048216  T
Q  144 atgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    | ||||||||||| || |||||||||||||| ||||||||    
T  49048217 acgaatgcactttatactctttcatcacccatatttcaac 49048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 49040781 - 49040853
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||   ||||||| ||||||||| || |||||    
T  49040781 catcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 49040853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 48735031 - 48735098
Alignment:
Q  102 tgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatc 169  Q
    ||||||||||||||| ||  | | || ||| |||||||||||| |||| |||||||||||||||||||    
T  48735031 tgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 48870992 - 48870921
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48870992 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 48876296 - 48876225
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48876296 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 48886678 - 48886607
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48886678 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttc 180  Q
    ||||| || ||||||||||| |||| |||||||  ||||||||||||| ||||| | |||||| |||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  134 ttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    |||||||||||  ||||||||||||||||||| || ||||| |||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 49040720 - 49040768
Alignment:
Q  38 ccatttgttgcaacaatatcaccactttttgtagagcatattggggaaa 86  Q
    ||||||| |||||||||||  |||||||||||| ||||||| |||||||    
T  49040720 ccatttgatgcaacaatattgccactttttgtacagcatataggggaaa 49040768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 42561966 - 42562035
Alignment:
Q  115 aataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaaca 184  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42561966 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaaca 42562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 179462 - 179418
Alignment:
Q  139 ccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaac 179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 9120182 - 9120123
Alignment:
Q  124 aacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||| |||  ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaac 9120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 11005554 - 11005628
Alignment:
Q  108 tgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||||||  |  |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  11005554 tgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 47451467 - 47451601
Alignment:
Q  43 tgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaa 142  Q
    |||| ||| ||||||||||||||||||||||  ||  ||| ||||||||       ||| |||| ||||||||||||||||||||||||  ||   ||||    
T  47451467 tgttccaataatatcaccactttttgtagaggttaaggggtaaaagtact------gagagggaatgccatcaataggaagaacaagagtcttttcccaa 47451560  T
Q  143 gatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    || ||||  ||||||||||||||||||||||| ||||||||    
T  47451561 gacgaattaactttgtattctttcatcacccatatttcaac 47451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 11015053 - 11015192
Alignment:
Q  38 ccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtac-caagtgggagtgggagtgccatcaataggaagaacaagagcttta 136  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||| | | ||| |||       ||| | || |||||||||  || ||||||| ||||    
T  11015053 ccatttgttccaataataccaccactttttgtagagcatattgggggataatactcaa-------tggaaatgtcatcaatagataggacaagagtttta 11015145  T
Q  137 gtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
      |||||| ||||||||||||||||||||||| ||||| ||||||||    
T  11015146 acccaagacgaatgcactttgtattctttcataacccatatttcaac 11015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 11024133 - 11024203
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||  || |||||||  ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 11024065 - 11024110
Alignment:
Q  38 ccatttgttgcaacaatatcaccactttttgtagagcatattgggg 83  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  11024065 ccatttgttccaataatatgaccacattttgtagagcatattgggg 11024110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  121 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 24416199 - 24416138
Alignment:
Q  122 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||||||||| || |||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaac 24416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 24340833 - 24340771
Alignment:
Q  121 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| || |||||    
T  24340833 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 24353198 - 24353136
Alignment:
Q  121 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| || |||||    
T  24353198 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 24367586 - 24367534
Alignment:
Q  122 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||| |||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattaccca 24367534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 24310635 - 24310576
Alignment:
Q  124 aacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    |||||||| |||| ||||||| || |||||||||||||||||||||||||| || |||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaac 24310576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 24369872 - 24369830
Alignment:
Q  112 atcaataggaagaacaagagctttagtccaagatgaatgcact 154  Q
    |||||||  ||||||||||| ||||||||||||||||||||||    
T  24369872 atcaatactaagaacaagagttttagtccaagatgaatgcact 24369830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 4030328 - 4030403
Alignment:
Q  16 atacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtac 91  Q
    |||||||| ||||||| |  | |||| |||| ||| ||||||||||||| |||||||||| |||||||||||||||    
T  4030328 atacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaagtac 4030403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 4031578 - 4031627
Alignment:
Q  134 ttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||| ||||||| ||||||||||||||| ||||| ||||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 15349315 - 15349244
Alignment:
Q  111 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 182  Q
    ||||||||  ||||||||||   || |||||||| || | |||||||||||||||||||||||| |||||||    
T  15349315 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 4962183 - 4962225
Alignment:
Q  146 gaatgcactttgtattctttcatcacccaaatttcaacactac 188  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||    
T  4962183 gaatgcagtttgtattctttcatcacccatatttcaactctac 4962225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 12195754 - 12195684
Alignment:
Q  113 tcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||  |||||||  |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  12195754 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12195684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 12440182 - 12440112
Alignment:
Q  113 tcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||  |||||||  |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  12440182 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 4962095 - 4962131
Alignment:
Q  52 aatatcaccactttttgtagagcatattggggaaaag 88  Q
    |||||||||||||||||||||  ||||||||||||||    
T  4962095 aatatcaccactttttgtagaatatattggggaaaag 4962131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12200824 - 12200788
Alignment:
Q  52 aatatcaccactttttgtagagcatattggggaaaag 88  Q
    |||||||||||||||||||||| |||| |||||||||    
T  12200824 aatatcaccactttttgtagagtatataggggaaaag 12200788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12445252 - 12445216
Alignment:
Q  52 aatatcaccactttttgtagagcatattggggaaaag 88  Q
    |||||||||||||||||||||| |||| |||||||||    
T  12445252 aatatcaccactttttgtagagtatataggggaaaag 12445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 48884247 - 48884184
Alignment:
Q  120 gaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||||||||  |||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  48884247 gaagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 30130916 - 30130954
Alignment:
Q  136 agtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcaccca 30130954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 14197337 - 14197375
Alignment:
Q  136 agtccaagatgaatgcactttgtattctttcatcaccca 174  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcaccca 14197375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 21016320 - 21016181
Alignment:
Q  38 ccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttag 137  Q
    |||| |||| ||| ||||||||||||||||||| | |||||||| || || || |      |||||||| || |||||||||  | |  |||||  ||||    
T  21016320 ccatctgttccaataatatcaccactttttgtacaacatattggagagaaataac------gagtgggaatgtcatcaatagagaaagtaagagtcttag 21016227  T
Q  138 tccaagatgaatgcactttgtattctttcatcacccaaatttcaac 183  Q
    ||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  21016226 tccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 21979284 - 21979325
Alignment:
Q  138 tccaagatgaatgcactttgtattctttcatcacccaaattt 179  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  21979284 tccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University