View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17692_low_3 (Length: 356)
Name: NF17692_low_3
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17692_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 766589 - 766925
Alignment:
| Q |
1 |
acaatctcacacaatcatttatttgttattttggtggccattagatcgagatcaaatagtttagatttcaaactcgacttttggatttaaaagaaaaat- |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766589 |
acaatctcacacaatcatttatttgttattttggtggccattagatcaagatcaaatagtttagatttcaaactcgacttttggatttaaaagaaaaatc |
766688 |
T |
|
| Q |
100 |
aaaatcatgtaatgaaatctgaattgtttgatcttgatctagcagggatcagttgtgagtgtaggcaatccaaatccttcctatataacaatgctactac |
199 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766689 |
aaaatcatataatgaaatctgaattgtttgatcttgatctagcagggatcacttgtgagtgtaggcaatccaaatccttcctatataacaatgctactac |
766788 |
T |
|
| Q |
200 |
aaaattactactacacataaatctttattctaaaaaacaattaaggaggttttctgattattgtatgtgtttgattataataaatgttgattaactagac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
766789 |
aaaattactactacacataaatctttattctaaaaaacaattaaggaggttt--tgattattgtatgtgtttgattacgataaatgttgattaactagac |
766886 |
T |
|
| Q |
300 |
catcaatgacgttttgttggggttgacacaagctggtct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766887 |
catcaatgacgttttgttggggttgacacaagctggtct |
766925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University