View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17692_low_6 (Length: 281)

Name: NF17692_low_6
Description: NF17692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17692_low_6
NF17692_low_6
[»] chr4 (33 HSPs)
chr4 (60-254)||(48147232-48147414)
chr4 (48-254)||(48155930-48156130)
chr4 (182-253)||(7790441-7790512)
chr4 (182-253)||(7908663-7908734)
chr4 (72-254)||(45365745-45365921)
chr4 (183-254)||(48864395-48864466)
chr4 (192-254)||(7878743-7878805)
chr4 (170-254)||(49043785-49043869)
chr4 (124-254)||(45371651-45371775)
chr4 (63-253)||(47208238-47208422)
chr4 (192-254)||(7773464-7773526)
chr4 (73-254)||(48853041-48853216)
chr4 (182-245)||(7771764-7771827)
chr4 (182-245)||(50666684-50666747)
chr4 (183-253)||(7813838-7813908)
chr4 (181-254)||(45384520-45384593)
chr4 (193-254)||(49038518-49038579)
chr4 (189-253)||(7786825-7786889)
chr4 (183-253)||(7800998-7801068)
chr4 (63-254)||(49048071-49048256)
chr4 (204-253)||(48903316-48903365)
chr4 (189-245)||(7237379-7237435)
chr4 (189-253)||(7766003-7766067)
chr4 (182-254)||(48863625-48863697)
chr4 (182-244)||(37826619-37826681)
chr4 (182-254)||(49040781-49040853)
chr4 (173-240)||(48735031-48735098)
chr4 (182-253)||(48870921-48870992)
chr4 (182-253)||(48876225-48876296)
chr4 (182-253)||(48886607-48886678)
chr4 (60-157)||(49040671-49040768)
chr4 (183-251)||(7823332-7823400)
chr4 (205-253)||(48861649-48861697)
[»] chr5 (3 HSPs)
chr5 (186-255)||(42561966-42562035)
chr5 (210-254)||(179418-179462)
chr5 (195-254)||(9120123-9120182)
[»] chr8 (9 HSPs)
chr8 (60-162)||(4030301-4030403)
chr8 (205-254)||(4031578-4031627)
chr8 (182-253)||(15349244-15349315)
chr8 (217-259)||(4962183-4962225)
chr8 (184-254)||(12195684-12195754)
chr8 (184-254)||(12440112-12440182)
chr8 (123-159)||(4962095-4962131)
chr8 (123-159)||(12200788-12200824)
chr8 (123-159)||(12445216-12445252)
[»] chr3 (5 HSPs)
chr3 (72-254)||(47451425-47451601)
chr3 (179-253)||(11005554-11005628)
chr3 (109-254)||(11015053-11015192)
chr3 (183-253)||(11024133-11024203)
chr3 (109-154)||(11024065-11024110)
[»] chr1 (7 HSPs)
chr1 (192-245)||(24323139-24323192)
chr1 (193-254)||(24416138-24416199)
chr1 (192-254)||(24340771-24340833)
chr1 (192-254)||(24353136-24353198)
chr1 (193-245)||(24367534-24367586)
chr1 (195-254)||(24310576-24310635)
chr1 (183-225)||(24369830-24369872)
[»] chr7 (2 HSPs)
chr7 (191-254)||(48884184-48884247)
chr7 (207-245)||(30130916-30130954)
[»] chr6 (3 HSPs)
chr6 (207-245)||(14197337-14197375)
chr6 (109-254)||(21016181-21016320)
chr6 (209-250)||(21979284-21979325)
[»] chr2 (1 HSPs)
chr2 (60-154)||(29350876-29350970)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 48147232 - 48147414
Alignment:
Q  60 atgctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaag 159  Q
    |||||||||||||||||||| ||| |||||||||||||||||| |||| ||||||||| ||| ||| |||||||||||||| |||||||| |||||||||    
T  48147232 atgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaag 48147331  T
Q  160 taccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||            |||| ||||||||||||  | |  |||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  48147332 ta------------gggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 48155930 - 48156130
Alignment:
Q  48 ccagtatgattcatgctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcat 147  Q
    |||| ||||| ||||||||||||||||||||  |||||||||||| |  ||||   | || || | |||| ||||||| |||||| ||||||||||||||    
T  48155930 ccagaatgatccatgctctagaagctgtcctctgtcattatactttagtaatttgatatcaccgtctgttccaacaatgtcaccattttttgtagagcat 48156029  T
Q  148 attggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaa 247  Q
    |||||| ||||| |  |||    |||   | |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |    
T  48156030 attgggtaaaagga--aag----agtataaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccata 48156123  T
Q  248 tttcaac 254  Q
    |||||||    
T  48156124 tttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 7790512 - 7790441
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 7908734 - 7908663
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7908734 catcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 45365745 - 45365921
Alignment:
Q  72 ctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtggga 171  Q
    ||||||||| ||||||||||||| ||||  |||     ||| |||| ||| ||||||||| ||||||||||||||||  |||||||||||        ||    
T  45365745 ctgtccttcatcattatacttcaccaatctattaagatcatctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtatt------ga 45365838  T
Q  172 gtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||| |||||||||||||||||||  |||  || |||||||| ||| ||||||| ||||||||||||||||| ||||||||    
T  45365839 gtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaac 45365921  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 7878805 - 7878743
Alignment:
Q  192 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaac 7878743  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 49043785 - 49043869
Alignment:
Q  170 gagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||| || ||||||||| || ||||||||  |||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  49043785 gagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 45371651 - 45371775
Alignment:
Q  124 atatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgca 223  Q
    |||||||| ||||||||| | || | ||||||||||||||      |||| |||  |||||| ||||||||||||| ||  ||||||||||| |||||||    
T  45371651 atatcaccgctttttgtacaacacaatggggaaaagtacc------gagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgca 45371744  T
Q  224 ctttgtattctttcatcacccaaatttcaac 254  Q
    |||||||||||||||| ||||| ||||||||    
T  45371745 ctttgtattctttcataacccatatttcaac 45371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 253
Target Start/End: Complemental strand, 47208422 - 47208238
Alignment:
Q  63 ctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtac 162  Q
    ||||||||||||||||| || ||||||||||| |  | || |||   ||| | || ||| ||| ||||||||||||||||| |||||||||  |||||||    
T  47208422 ctctagaagctgtcctttgtgattatacttcagccttccagttttgtcatctcttccaataatgtcaccactttttgtagaacatattgggataaagtac 47208323  T
Q  163 caagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |      ||| |||  || |||||| || ||||| |||| |||||||||||||||| || ||||||||||||||||||||||  |||||||    
T  47208322 c------gagaggggttgacatcaagagaaagaataagaactttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 7773464 - 7773526
Alignment:
Q  192 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaac 7773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 48853216 - 48853041
Alignment:
Q  73 tgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggag 172  Q
    ||||||||| ||| |||||||| |||| || | || ||||  ||| ||| |||||||||||| |||||| | |||||||||||||||||   |||||||     
T  48853216 tgtccttcgccatcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaa 48853117  T
Q  173 tgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||| | |      || || |||||||||||  ||||||||||| ||| ||||||||||||||||||| ||||| ||||||||    
T  48853116 tggaact------aaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaac 48853041  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 7771827 - 7771764
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    |||||| || ||||||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  7771827 catcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcaccca 7771764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 50666747 - 50666684
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    |||||||  ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  50666747 catcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcaccca 50666684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||| || ||||||||||| |||| ||||||| |||||||||||||||||||||| |||||| |||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 45384520 - 45384593
Alignment:
Q  181 ccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||| |||||||||| |||  || |||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  45384520 ccatcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  193 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||  ||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 7786889 - 7786825
Alignment:
Q  189 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||||||||  ||| |||||||| ||||||| |||||||||||||||||||| |||||||    
T  7786889 aggaagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||| || ||||||||||| |||| ||||||| |||||||||||||| ||||||| |||||| |||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 49048071 - 49048256
Alignment:
Q  63 ctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtac 162  Q
    |||||||| ||||||||  ||||  ||||||| |||| ||  ||| ||||  ||||||| |||||||||||||||||||  ||||||||| || |||       
T  49048071 ctctagaaactgtcctttttcatcgtacttcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaag--- 49048167  T
Q  163 caagtgggagtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||| ||||  ||||| || ||||| ||| || ||||| ||  |||||||| || ||||||||||| || |||||||||||||| ||||||||    
T  49048168 caa-tggg--tgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaac 49048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 48903365 - 48903316
Alignment:
Q  204 tttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  48903365 tttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 7237379 - 7237435
Alignment:
Q  189 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    |||||| ||||||| |||||||||| | ||||||| |||||||||||||||||||||    
T  7237379 aggaagcacaagagttttagtccaaaacgaatgcattttgtattctttcatcaccca 7237435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 7766067 - 7766003
Alignment:
Q  189 aggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||||||||| |  |||||||| || |||| |||||||||||||||||||||||| |||||||    
T  7766067 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 48863697 - 48863625
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||  |||||||| ||||||||| || |||||    
T  48863697 catcaatagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaac 48863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 37826619 - 37826681
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccc 244  Q
    |||||||  ||| ||||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  37826619 catcaatccgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 49040781 - 49040853
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||   ||||||| ||||||||| || |||||    
T  49040781 catcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaac 49040853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 48735031 - 48735098
Alignment:
Q  173 tgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatc 240  Q
    ||||||||||||||| ||  | | || ||| |||||||||||| |||| |||||||||||||||||||    
T  48735031 tgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 48870992 - 48870921
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48870992 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 48876296 - 48876225
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48876296 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 48886678 - 48886607
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||| || |||||||||||  || |||||||| || | |||||||||||| ||||||||||| |||||||    
T  48886678 catcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaa 48886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 49040671 - 49040768
Alignment:
Q  60 atgctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaa 157  Q
    ||||||||||| || ||||| ||||||||| |||| || | || |    ||||||| |||||||||||  |||||||||||| ||||||| |||||||    
T  49040671 atgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtacagcatataggggaaa 49040768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttc 251  Q
    ||||| || ||||||||||| |||| |||||||  ||||||||||||| ||||| | |||||| |||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  205 ttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    |||||||||||  ||||||||||||||||||| || ||||| |||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 42561966 - 42562035
Alignment:
Q  186 aataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaaca 255  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  42561966 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaaca 42562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 179462 - 179418
Alignment:
Q  210 ccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaac 179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 9120182 - 9120123
Alignment:
Q  195 aacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||| |||  ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaac 9120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 4030301 - 4030403
Alignment:
Q  60 atgctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaag 159  Q
    ||||||||| | |||||||| ||||| |||||||| ||||||| |  | |||| |||| ||| ||||||||||||| |||||||||| ||||||||||||    
T  4030301 atgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacattggggaaaag 4030400  T
Q  160 tac 162  Q
    |||    
T  4030401 tac 4030403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 4031578 - 4031627
Alignment:
Q  205 ttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||| ||||||| ||||||||||||||| ||||| ||||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 15349315 - 15349244
Alignment:
Q  182 catcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||  ||||||||||   || |||||||| || | |||||||||||||||||||||||| |||||||    
T  15349315 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 4962183 - 4962225
Alignment:
Q  217 gaatgcactttgtattctttcatcacccaaatttcaacactac 259  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||    
T  4962183 gaatgcagtttgtattctttcatcacccatatttcaactctac 4962225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 12195754 - 12195684
Alignment:
Q  184 tcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||  |||||||  |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  12195754 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12195684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 12440182 - 12440112
Alignment:
Q  184 tcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||  |||||||  |||||||||||||| ||   |||||||||||||||| |||| ||||||||    
T  12440182 tcaataggaattacaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 4962095 - 4962131
Alignment:
Q  123 aatatcaccactttttgtagagcatattggggaaaag 159  Q
    |||||||||||||||||||||  ||||||||||||||    
T  4962095 aatatcaccactttttgtagaatatattggggaaaag 4962131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 12200824 - 12200788
Alignment:
Q  123 aatatcaccactttttgtagagcatattggggaaaag 159  Q
    |||||||||||||||||||||| |||| |||||||||    
T  12200824 aatatcaccactttttgtagagtatataggggaaaag 12200788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 12445252 - 12445216
Alignment:
Q  123 aatatcaccactttttgtagagcatattggggaaaag 159  Q
    |||||||||||||||||||||| |||| |||||||||    
T  12445252 aatatcaccactttttgtagagtatataggggaaaag 12445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 254
Target Start/End: Original strand, 47451425 - 47451601
Alignment:
Q  72 ctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtggga 171  Q
    |||||||| |||||||||||| | |||| |  | ||  ||| |||| ||| ||||||||||||||||||||||  ||  ||| ||||||||       ||    
T  47451425 ctgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaagtact------ga 47451518  T
Q  172 gtgggagtgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    | |||| ||||||||||||||||||||||||  ||   |||||| ||||  ||||||||||||||||||||||| ||||||||    
T  47451519 gagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 47451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 11005554 - 11005628
Alignment:
Q  179 tgccatcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||||||  |  |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  11005554 tgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 11015053 - 11015192
Alignment:
Q  109 ccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtac-caagtgggagtgggagtgccatcaataggaagaacaagagcttta 207  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||| | | ||| |||       ||| | || |||||||||  || ||||||| ||||    
T  11015053 ccatttgttccaataataccaccactttttgtagagcatattgggggataatactcaa-------tggaaatgtcatcaatagataggacaagagtttta 11015145  T
Q  208 gtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
      |||||| ||||||||||||||||||||||| ||||| ||||||||    
T  11015146 acccaagacgaatgcactttgtattctttcataacccatatttcaac 11015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 11024133 - 11024203
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaa 253  Q
    ||||||||  || |||||||  ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 11024065 - 11024110
Alignment:
Q  109 ccatttgttgcaacaatatcaccactttttgtagagcatattgggg 154  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  11024065 ccatttgttccaataatatgaccacattttgtagagcatattgggg 11024110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  192 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 24416199 - 24416138
Alignment:
Q  193 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||||||||| || |||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaac 24416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 24340833 - 24340771
Alignment:
Q  192 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| || |||||    
T  24340833 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 24353198 - 24353136
Alignment:
Q  192 aagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| || |||||    
T  24353198 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 24367586 - 24367534
Alignment:
Q  193 agaacaagagctttagtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||| |||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattaccca 24367534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 24310635 - 24310576
Alignment:
Q  195 aacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    |||||||| |||| ||||||| || |||||||||||||||||||||||||| || |||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaac 24310576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 24369872 - 24369830
Alignment:
Q  183 atcaataggaagaacaagagctttagtccaagatgaatgcact 225  Q
    |||||||  ||||||||||| ||||||||||||||||||||||    
T  24369872 atcaatactaagaacaagagttttagtccaagatgaatgcact 24369830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 48884247 - 48884184
Alignment:
Q  191 gaagaacaagagctttagtccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||||||||  |||||||||||   ||||||||||||||||||||||||| | ||||||||    
T  48884247 gaagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 30130916 - 30130954
Alignment:
Q  207 agtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcaccca 30130954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 14197337 - 14197375
Alignment:
Q  207 agtccaagatgaatgcactttgtattctttcatcaccca 245  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcaccca 14197375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 21016320 - 21016181
Alignment:
Q  109 ccatttgttgcaacaatatcaccactttttgtagagcatattggggaaaagtaccaagtgggagtgggagtgccatcaataggaagaacaagagctttag 208  Q
    |||| |||| ||| ||||||||||||||||||| | |||||||| || || || |      |||||||| || |||||||||  | |  |||||  ||||    
T  21016320 ccatctgttccaataatatcaccactttttgtacaacatattggagagaaataac------gagtgggaatgtcatcaatagagaaagtaagagtcttag 21016227  T
Q  209 tccaagatgaatgcactttgtattctttcatcacccaaatttcaac 254  Q
    ||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  21016226 tccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 21979284 - 21979325
Alignment:
Q  209 tccaagatgaatgcactttgtattctttcatcacccaaattt 250  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  21979284 tccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 29350970 - 29350876
Alignment:
Q  60 atgctctagaagctgtccttcgtcattatacttcaacaattcattttctccatttgttgcaacaatatcaccactttttgtagagcatattgggg 154  Q
    ||||||||| | |||||||| ||||| |||||||| ||||||| |  | ||||  ||| ||| ||||||||||| | |||||||||| |||||||    
T  29350970 atgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcaccacctattgtagagcacattgggg 29350876  T

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