View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17693_low_1 (Length: 368)

Name: NF17693_low_1
Description: NF17693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17693_low_1
NF17693_low_1
[»] chr6 (1 HSPs)
chr6 (80-358)||(8628533-8628811)
[»] chr7 (2 HSPs)
chr7 (18-81)||(4246378-4246441)
chr7 (18-80)||(4241784-4241846)
[»] chr2 (2 HSPs)
chr2 (18-80)||(40088224-40088286)
chr2 (18-80)||(40092817-40092879)
[»] scaffold0002 (1 HSPs)
scaffold0002 (18-80)||(495528-495590)
[»] chr8 (2 HSPs)
chr8 (18-80)||(12463173-12463235)
chr8 (154-214)||(22640292-22640352)
[»] chr1 (4 HSPs)
chr1 (18-80)||(8189284-8189346)
chr1 (24-80)||(8192465-8192521)
chr1 (161-356)||(44884300-44884491)
chr1 (242-303)||(42106107-42106168)
[»] chr3 (3 HSPs)
chr3 (18-80)||(8016664-8016726)
chr3 (18-80)||(24563049-24563111)
chr3 (18-67)||(8018802-8018851)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 80 - 358
Target Start/End: Complemental strand, 8628811 - 8628533
Alignment:
Q  80 aattacaagtagatgaaccttttctgcgcaaatccaaactgattttcattcgcaaagttcatggacatcctcgttaactttagatgttgaattaacaaac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8628811 aattacaagtagatgaaccttttctgcgcaaatccaaactgattttcattcgcaaagttcatggacatcctcgttaactttagatgttgaattaacaaac 8628712  T
Q  180 tcctcattagattcttcaagatccaataaatcaagttttgcagtcgcatgcactttgcaaatattgaatcgcaatatcatggtgttgttcggatcgcaaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  8628711 tcctcattagattcttcaagatccaataaatcaagttttgcagtcgcatgcattttgcaaatattgaatcgcaatatcatggtgttgttcggatcgcgaa 8628612  T
Q  280 cctcttttagataggtcaagggagcgaaccttaaccttattaaacaataaagtgcttgaagctttgctgcctccttcat 358  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8628611 ccacttttagataggtcaagggagtgaaccttaaccttattaaacaataaagtgcttgaagctttgctgcctccttcat 8628533  T

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Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4246378 - 4246441
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttacaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4246378 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttacaa 4246441  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 4241784 - 4241846
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4241784 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 4241846  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 40088224 - 40088286
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40088224 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 40088286  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 40092817 - 40092879
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40092817 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 40092879  T

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Target: scaffold0002 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 495528 - 495590
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  495528 accttgtatatattccctactttcatatcaatgaaataaaccattataccattttcttttaca 495590  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12463173 - 12463235
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12463173 accttgtatatattccctactttcatatcaatgaaatataccattataccattttcttttaca 12463235  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 22640352 - 22640292
Alignment:
Q  154 taactttagatgttgaattaacaaactcctcattagattcttcaagatccaataaatcaag 214  Q
    |||||| ||||||||||||| ||| ||| ||||| |  |||||||||||||| ||||||||    
T  22640352 taacttcagatgttgaattaccaagctcttcatttgtatcttcaagatccaacaaatcaag 22640292  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 8189346 - 8189284
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  8189346 accttgtatatattccctactttcatatcaatgaaatacaccaggataccattttcttttaca 8189284  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 8192521 - 8192465
Alignment:
Q  24 tatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8192521 tatatattccctactttcatatcaatgaaatacaccagtataccattttcttttaca 8192465  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 356
Target Start/End: Original strand, 44884300 - 44884491
Alignment:
Q  161 agatgttgaattaacaaactcctcattagattcttcaagatccaataaatcaagttttgcagtcgcatgcactttgcaaatattgaatcgcaatatcatg 260  Q
    |||||| |||||||||||||||||||| ||||||||||| || | || ||||||||||||| |    |||| |||||||| ||||||| |||||||||||    
T  44884300 agatgtcgaattaacaaactcctcatttgattcttcaagctctattagatcaagttttgcaat----tgcattttgcaaacattgaattgcaatatcatg 44884395  T
Q  261 gtgttgttcggatcgcaaacctcttttagataggtcaagggagcgaaccttaaccttattaaacaataaagtgcttgaagctttgctgcctccttc 356  Q
     |||| ||  |||||  || |||||| ||| |  ||||| |  |||||| ||||  ||||||||||| ||||||| ||||||| | | ||||||||    
T  44884396 atgtttttttgatcgtgaagctctttcagaaaattcaagaggacgaaccataacactattaaacaatgaagtgctagaagcttcgtttcctccttc 44884491  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 42106168 - 42106107
Alignment:
Q  242 attgaatcgcaatatcatggtgttgttcggatcgcaaacctcttttagataggtcaagggag 303  Q
    ||||||||||||||||||| | || |||||| ||||||||||||| |||||| |||||||||    
T  42106168 attgaatcgcaatatcatgatatttttcggaccgcaaacctctttcagatagttcaagggag 42106107  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 8016664 - 8016726
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||    
T  8016664 accttgtatatattccctactttcatatcaatgaaatacactagtatacccttttcttttaca 8016726  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 24563049 - 24563111
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattataccattttcttttaca 80  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  24563049 accttgtatatattccctacttccatatcaatgaaatataccagtataccattttcttttaca 24563111  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8018802 - 8018851
Alignment:
Q  18 accttgtatatattccctactttcatatcaatgaaatacaccattatacc 67  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  8018802 accttgtatatattccctactttcatatcaattaaatacaccagtatacc 8018851  T

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