View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17694_low_1 (Length: 358)
Name: NF17694_low_1
Description: NF17694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17694_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 350
Target Start/End: Complemental strand, 20649089 - 20648763
Alignment:
| Q |
24 |
gattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgctttagttggcc |
123 |
Q |
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| T |
20649089 |
gattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcctttagttggcc |
20648990 |
T |
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| Q |
124 |
aggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatttgatactgg |
223 |
Q |
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| T |
20648989 |
acgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatatgatactgg |
20648890 |
T |
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| Q |
224 |
tatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatactgatcatgtt |
323 |
Q |
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| T |
20648889 |
tatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaataggagcatgaaagttttgtatactgatcatgtt |
20648790 |
T |
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| Q |
324 |
cccgagtatactgctcctgatgatgtc |
350 |
Q |
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| T |
20648789 |
ccggagtatactgctcctgatgatgtc |
20648763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 350
Target Start/End: Complemental strand, 20632990 - 20632667
Alignment:
| Q |
24 |
gattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattgctttagttggcc |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
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| T |
20632990 |
gattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtggtgatgattcccctattcctttcgctggcc |
20632891 |
T |
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| Q |
124 |
aggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatttgatactgg |
223 |
Q |
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| T |
20632890 |
acgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggaggggaacaaattctaccgaaatatgatactgg |
20632794 |
T |
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| Q |
224 |
tatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataagagcattgaagttttgtatactgatcatgtt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
20632793 |
tatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataagagcatgaaagttttgtatactgatcatgtt |
20632694 |
T |
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| Q |
324 |
cccgagtatactgctcctgatgatgtc |
350 |
Q |
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| T |
20632693 |
ccggagtatactgctcctgatgatgtc |
20632667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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