View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17695_high_4 (Length: 324)
Name: NF17695_high_4
Description: NF17695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17695_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 45397557 - 45397245
Alignment:
| Q |
1 |
cattcacgtcatatatattattggccttattcgtcatcgagtcaactttattttcccaactttagacaattacgtatacatcttttgccataattatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45397557 |
cattcacgtcatatatattattggccttattcgtcatcgagtcaactttattttcccaactttagacaattacgtatacatcttttgccataattatgaa |
45397458 |
T |
|
| Q |
101 |
cgtcatgagttttggccaattgtctaattttgttgccaattcatttggaattttgttctttttccgtgtgtgtaaaggaatatcaataagatgaattagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45397457 |
cgtcatgagttttggccaattgtctaattttgttgccaattcatttggaattttgttctttttccgtgtgcgtaaaggaatatcaataagatgaattagt |
45397358 |
T |
|
| Q |
201 |
gaagtgatgcaaacacacgagttgtgaaggacatgcattgtggtgcaattccaaagaactagctagaaaagagtgtatatcccgaaatcttttaaaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45397357 |
gaagtgatgcaaacacacgagttgtgaaggacatgcattgtggtgcaattccaaagaactagctagaaaaga--gtatatcccgaaatcttttaaaattc |
45397260 |
T |
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| Q |
301 |
aaatttcatctcact |
315 |
Q |
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||||||||| ||||| |
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| T |
45397259 |
aaatttcatatcact |
45397245 |
T |
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