View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17695_low_5 (Length: 291)
Name: NF17695_low_5
Description: NF17695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17695_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 36808975 - 36808719
Alignment:
| Q |
20 |
ctctaacaaacctacaaatcttctgcgctagaagaccacaatggcccctatcatcgaatcgaaaattgcttcgactagtttccacactcgcattcaatct |
119 |
Q |
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| T |
36808975 |
ctctaacaaacctacaaatcgtctgcgctagaagaccacaatggcccctatcgtcgaatcgaaaattgcttcaactagtttccacactcgcattcaatct |
36808876 |
T |
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| Q |
120 |
caagatcttgccagaaccctttaattccctcgtcggcaaaatcgcacaaaccaattcgaatgaacatcggattgtgaaccgtctcatcagtggctggagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36808875 |
caagatcttgccagaaccctttaattccctcgtccgcgaaatcgcacaaaccaattcgaatgaacatcggattgtgaaccgtctcatcagtggctggagt |
36808776 |
T |
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| Q |
220 |
aggaaaacaaacaaatcgaacaagaggatgaatgagaagaagtttttgttgccattg |
276 |
Q |
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||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||| |
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| T |
36808775 |
aggaaaacaaacaaatcgagcaagaggaggaatgagcagatgtttttgttgccattg |
36808719 |
T |
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