View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17696_high_3 (Length: 221)
Name: NF17696_high_3
Description: NF17696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17696_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 52248479 - 52248663
Alignment:
| Q |
18 |
gaaccttggaagaattgcaaatttgagaactgaatccaccagtgaatgaattgttactcacactgagagcaagtagacgtggaaattcaccaaggtggaa |
117 |
Q |
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| T |
52248479 |
gaaccttggaagaattgcaaatttgagaactgaatccaccagtgaatgaattgttactcacactgagagcaagtagacgtggaaattcaccaaggtggaa |
52248578 |
T |
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| Q |
118 |
aaactcaccaggaaacgagttacttttaaatattcaacacttcaatgagtttcaaaccaaaaagtgtctcagaaacaggtcctgac |
203 |
Q |
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| T |
52248579 |
aaactcaccaggaaacgagttac-tttaaatattcaacacttcaatgagtttcaaaccaaaaagtgtctcagaaacaggtcctgac |
52248663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 32998850 - 32999006
Alignment:
| Q |
26 |
gaagaattgcaaatttgagaactgaatccaccagtgaatgaattgttactcacactgagagcaagtagacgtggaaattcaccaaggtggaaaaactcac |
125 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||| | | |
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| T |
32998850 |
gaagaattgcaaatttgagaactgaatccaccagagaatgaattgttactcacattgagtgcaagtagatgaggaaattcaccaaggtggaaaactttat |
32998949 |
T |
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| Q |
126 |
caggaaacgagttacttttaaatattcaacacttcaatgagtttcaaaccaaaaagtg |
183 |
Q |
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| T |
32998950 |
cagaaaatgaattgc-ttgaaatattcaacacttcaatggacttcaaaccagaaagtg |
32999006 |
T |
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