View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17696_low_1 (Length: 442)

Name: NF17696_low_1
Description: NF17696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17696_low_1
NF17696_low_1
[»] chr8 (2 HSPs)
chr8 (20-426)||(45311364-45311770)
chr8 (195-294)||(30446129-30446228)
[»] chr6 (2 HSPs)
chr6 (21-118)||(24207634-24207730)
chr6 (167-302)||(24207292-24207428)
[»] chr4 (4 HSPs)
chr4 (28-118)||(20135916-20136006)
chr4 (158-275)||(20133044-20133161)
chr4 (68-118)||(29540605-29540655)
chr4 (21-58)||(21014857-21014894)
[»] chr1 (4 HSPs)
chr1 (21-94)||(15741599-15741672)
chr1 (191-280)||(15741200-15741289)
chr1 (324-384)||(6586991-6587051)
chr1 (74-118)||(31108124-31108168)
[»] scaffold0758 (1 HSPs)
scaffold0758 (35-118)||(5017-5101)
[»] chr3 (5 HSPs)
chr3 (23-118)||(49322140-49322235)
chr3 (194-330)||(48050490-48050629)
chr3 (181-281)||(49321731-49321831)
chr3 (338-384)||(9107226-9107272)
chr3 (21-70)||(44112034-44112083)
[»] chr2 (5 HSPs)
chr2 (188-272)||(25658589-25658673)
chr2 (328-384)||(2314406-2314463)
chr2 (21-70)||(10003719-10003768)
chr2 (320-385)||(36184475-36184540)
chr2 (320-384)||(35664413-35664477)
[»] chr7 (1 HSPs)
chr7 (342-384)||(3412289-3412331)
[»] chr5 (1 HSPs)
chr5 (70-118)||(16183525-16183573)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 45311770 - 45311364
Alignment:
Q  20 tattgacaatctcaactagtttttcaataattgtaactttgaaaatcttctatagaaaatgtgagattcaattccctaataggccccttttcaattaaat 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45311770 tattgacaatctcaactagttttttaataattgtaactttgaaaatcttctataggaaatgtgagattcaattccctaataggccccttttcaattaaat 45311671  T
Q  120 tcagtttttcaatatgctgcnnnnnnnnnnnnnnnnnncattacccgatgcatgctttcatgaaaatattatatcatcacaataaattataacaaggtca 219  Q
    | ||||||||||||  || |                  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  45311670 tgagtttttcaatacactccttttttctttccttttttcattacccgatgcatgctttcgcgaaaatattatatcatcacaataaattataacaaggtca 45311571  T
Q  220 acaaagaaataaattcattattaacaaccaccccttcctttagagtttaagtaattattttgggactaatgaacctccaattcttttgttgggacctatg 319  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  45311570 acaaagaaataaattcattactaacaaccaccccttcctttagagtttaagtaattattttgggactaatgaacctccaattcttttgttgggacccagg 45311471  T
Q  320 ttttgtacttaattttttaggtctaggacggccgccctccttgccctgcctcagatacggccctggttctaaattctaatgaataacgacggatggacgg 419  Q
    |||  |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||     
T  45311470 tttcatacttaattttttaggtctaggacggccgctctccttgccctgcctcaaatacggcgttggttctaaattctaatgaataacgacggatggacga 45311371  T
Q  420 aaactag 426  Q
    |||||||    
T  45311370 aaactag 45311364  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 30446129 - 30446228
Alignment:
Q  195 atcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtttaagtaattattttgggactaatgaacc 294  Q
    |||||||||||||||||  ||||||| |||||| |||    |||| |||||||||| | | |||||||| ||||||||||| |||| || ||||||||||    
T  30446129 atcacaataaattataaataggtcaataaagaactaagcatattactaacaaccacacatccctttagaatttaagtaatttttttaggcctaatgaacc 30446228  T

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Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 24207730 - 24207634
Alignment:
Q  21 attgacaatctcaactagtttttcaataattgtaactttgaaaatcttctatagaaaatgtgagattcaattccctaataggccccttttcaattaaa 118  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  24207730 attgacaatctcaactagtttt-caataattgtaactttgcaaatcttctaaaggaaatgtgagattcaattccctaataggccctttttcaattaaa 24207634  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 24207428 - 24207292
Alignment:
Q  167 atgcatgctttcatgaaaatattatatcatcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtt 266  Q
    ||||||||||||| | |||||||||| ||||||| || | |||||| |||||||||||||||||| ||||||| ||| ||||||||||||||| | | ||    
T  24207428 atgcatgctttcacggaaatattataccatcacagtataatataactaggtcaacaaagaaataagttcattactaataaccaccccttccttcaaaatt 24207329  T
Q  267 taagtaattatttt-gggactaatgaacctccaattc 302  Q
     ||||||||||||| ||| |||||||||| |||||||    
T  24207328 caagtaattattttggggcctaatgaacccccaattc 24207292  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 20136006 - 20135916
Alignment:
Q  28 atctcaactagtttttcaataattgtaactttgaaaatcttctatagaaaatgtgagattcaattccctaataggcccc-ttttcaattaaa 118  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||| |||| ||||||||||||    
T  20136006 atctcaactagtttt-caataattgtaactttgaaaaacttctctaggaaatgtgaaattcaattccctaatagacccctttttcaattaaa 20135916  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 20133161 - 20133044
Alignment:
Q  158 cattacccgatgcatgctttcatgaaaatattatatcatcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcc 257  Q
    ||||||| |||||||||||||  ||| | ||| || |||||||||| ||| ||||  | |||||||||||||||  |||||| |||| ||||| | ||||    
T  20133161 cattaccagatgcatgctttcgcgaagacattgtaccatcacaatatattttaactggttcaacaaagaaataagctcattactaactaccacacattcc 20133062  T
Q  258 tttagagtttaagtaatt 275  Q
    |||||| ||||| |||||    
T  20133061 tttagaatttaaataatt 20133044  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 29540605 - 29540655
Alignment:
Q  68 tctatagaaaatgtgagattcaattccctaataggccccttttcaattaaa 118  Q
    |||||||||||||||||||||||||| |||||||| |   |||||||||||    
T  29540605 tctatagaaaatgtgagattcaattctctaataggtcatatttcaattaaa 29540655  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21014894 - 21014857
Alignment:
Q  21 attgacaatctcaactagtttttcaataattgtaactt 58  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  21014894 attgacaatctcaagtagtttttcaataattttaactt 21014857  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 15741672 - 15741599
Alignment:
Q  21 attgacaatctcaactagtttttcaataattgtaactttgaaaatcttctatagaaaatgtgagattcaattcc 94  Q
    |||||| | ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  15741672 attgacgacctcaactagtttttcaataaccgtaactttgaaaaacttctatagaaaatgtgagattcaattcc 15741599  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 15741289 - 15741200
Alignment:
Q  191 tatcatcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtttaagtaattatttt 280  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||| | ||||||||||  ||||||||||| ||| ||||||| ||||    
T  15741289 tatcatcacaataaattataactgggtcaacaaagaaataagttcatcactaacaaccacgtcttcctttagaatttcagtaattttttt 15741200  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 6587051 - 6586991
Alignment:
Q  324 gtacttaattttttaggtctaggacggccgccctccttgccctgcctcagatacggccctg 384  Q
    ||||||| |||||| ||| |||||||  ||||||| | |||||| ||||||||||||||||    
T  6587051 gtacttatttttttgggtttaggacgatcgccctcttcgccctgtctcagatacggccctg 6586991  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 31108168 - 31108124
Alignment:
Q  74 gaaaatgtgagattcaattccctaataggccccttttcaattaaa 118  Q
    ||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  31108168 gaaaatgtgagattcaatttcctaatagaccctttttcaaataaa 31108124  T

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Target: scaffold0758 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 5101 - 5017
Alignment:
Q  35 ctagtttttcaataattgtaactttgaaaatcttctatagaaaatgtgagattcaattccctaataggccc-cttttcaattaaa 118  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||| |||  ||||||||||||    
T  5101 ctagtttttcaataattgtaactttgaaaaatttctatagaaaatgtgagattcaattcctcaatagccccatttttcaattaaa 5017  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 49322235 - 49322140
Alignment:
Q  23 tgacaatctcaactagtttttcaataattgtaac-tttgaaaatcttctatagaaaatgtgagattcaattccctaataggccccttttcaattaaa 118  Q
    ||||| ||||||||| ||||||||||||  |||| ||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  49322235 tgacattctcaactaatttttcaataatgataacctttgaaaatcttcgatagaaaaagtgagattcaatttcctaatagg-cccttttcaattaaa 49322140  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 330
Target Start/End: Complemental strand, 48050629 - 48050490
Alignment:
Q  194 catcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtttaagtaattattttgggactaatgaac 293  Q
    |||||| |||||||||||   ||||||||||||| |||| || ||| || ||||||| | |||| ||||| ||||||||||| ||||||| |||||||||    
T  48050629 catcacgataaattataaatgggtcaacaaagaactaaactcgttactatcaaccacacattccattagaatttaagtaatttttttgggcctaatgaac 48050530  T
Q  294 ctccaa---ttcttttgttgggacctatgttttgtactta 330  Q
    ||| ||   || |||||||||||||||  ||| |||||||    
T  48050529 ctctaattttttttttgttgggacctaaatttcgtactta 48050490  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 49321831 - 49321731
Alignment:
Q  181 gaaaatattatatcatcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtttaagtaattatttt 280  Q
    ||||| |||||| ||| |||||||||||||||  |||||||||| |||| || ||||||||||||| | | |||  ||||||| |||||| |||| ||||    
T  49321831 gaaaacattataccataacaataaattataactgggtcaacaaaaaaatgaactcattattaacaatcgcgcctctctttagaatttaagcaattttttt 49321732  T
Q  281 g 281  Q
    |    
T  49321731 g 49321731  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 9107226 - 9107272
Alignment:
Q  338 aggtctaggacggccgccctccttgccctgcctcagatacggccctg 384  Q
    ||||||||||||| ||| ||| | |||||||||||||||||||||||    
T  9107226 aggtctaggacggtcgcgctcttcgccctgcctcagatacggccctg 9107272  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 44112083 - 44112034
Alignment:
Q  21 attgacaatctcaactagtttttcaataattgtaactttgaaaatcttct 70  Q
    |||||| ||||||| |||||||||||||||| |||||| ||||| |||||    
T  44112083 attgacgatctcaagtagtttttcaataattttaacttcgaaaaacttct 44112034  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 25658673 - 25658589
Alignment:
Q  188 ttatatcatcacaataaattataacaaggtcaacaaagaaataaattcattattaacaaccaccccttcctttagagtttaagta 272  Q
    ||||| ||||||||||| ||||||  |||||||||||||| ||||| ||||| |||||| ||| |||   |||||| ||||||||    
T  25658673 ttataacatcacaataatttataaataggtcaacaaagaactaaatccattactaacaatcacacctcattttagaatttaagta 25658589  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 2314406 - 2314463
Alignment:
Q  328 ttaattttttagg-tctaggacggccgccctccttgccctgcctcagatacggccctg 384  Q
    |||||||||| || ||||||| || || ||||||| ||||||||||||||||||||||    
T  2314406 ttaattttttgggatctaggatggtcgtcctccttaccctgcctcagatacggccctg 2314463  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 10003768 - 10003719
Alignment:
Q  21 attgacaatctcaactagtttttcaataattgtaactttgaaaatcttct 70  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||| |||||    
T  10003768 attgacaatctcaagtagtttttcaatcattttaacttcgaaaaacttct 10003719  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 36184475 - 36184540
Alignment:
Q  320 ttttgtacttaattttttaggtctaggacggccgccctccttgccctgcctcagatacggccctgg 385  Q
    ||||||||||| |||||  |||||||| ||| ||||||| | ||| |||||||||||||| |||||    
T  36184475 ttttgtacttattttttggggtctagggcggtcgccctcttcgccatgcctcagatacggtcctgg 36184540  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 35664477 - 35664413
Alignment:
Q  320 ttttgtacttaattttttaggtctaggacggccgccctccttgccctgcctcagatacggccctg 384  Q
    ||||||||||| |||||  || ||||| ||| ||||||| | |||||||||||||||||| ||||    
T  35664477 ttttgtacttattttttagggcctagggcggtcgccctcttcgccctgcctcagatacggtcctg 35664413  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 3412289 - 3412331
Alignment:
Q  342 ctaggacggccgccctccttgccctgcctcagatacggccctg 384  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  3412289 ctaggacggtcgccctcttcgccctgcctcagatacggccctg 3412331  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 16183573 - 16183525
Alignment:
Q  70 tatagaaaatgtgagattcaattccctaataggccccttttcaattaaa 118  Q
    ||||| |||||||||||||||||||| |||||  || ||||||||||||    
T  16183573 tataggaaatgtgagattcaattccccaatagaacctttttcaattaaa 16183525  T

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