View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17696_low_2 (Length: 234)
Name: NF17696_low_2
Description: NF17696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17696_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 6837878 - 6837742
Alignment:
| Q |
15 |
aagaatgacgaaagaaatgctccagcaatcagctctgccatgatattgtagtgaaatcctgagaggttcactgcaaaacgataatatgttatcttctgtt |
114 |
Q |
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| T |
6837878 |
aagaatgacgaaagaactgctccgccaaccagctctgccatgatattgtagtcaaatcctcagaggctcactgcaagttgataatatgttatattctgtt |
6837779 |
T |
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| Q |
115 |
aagc-----aaaatagaacaagaactatctttctata |
146 |
Q |
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| T |
6837778 |
gagcaaaataaaatagaaccagaactatctttctata |
6837742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 8472595 - 8472680
Alignment:
| Q |
15 |
aagaatgacgaaagaaatgctccagcaatcagctctgccatgata-ttgtagtgaaatcctgagaggttcactgcaaaacgataat |
99 |
Q |
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| T |
8472595 |
aagaatgatgaaagaaatgctccaccaatcaactctgccatgatatttgtagtcaaatcctaagagactcactgcaaaactataat |
8472680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 8567940 - 8567899
Alignment:
| Q |
21 |
gacgaaagaaatgctccagcaatcagctctgccatgatattg |
62 |
Q |
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| T |
8567940 |
gacgaaagaaatgcccccgcaatcagctctgccatgatattg |
8567899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 8472824 - 8472862
Alignment:
| Q |
150 |
cttttatatttctttatcactgttgttttctgaaatcaa |
188 |
Q |
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| T |
8472824 |
cttttatatttctttatcactgttgtttttagaaatcaa |
8472862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 6572290 - 6572164
Alignment:
| Q |
15 |
aagaatgacgaaagaaatgctccagcaatcagctctgccatgatattgtagtgaaatcctgagaggttcactgcaa-aacgat---aatatgttatcttc |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||||||| | || |||||||||||||| |
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| T |
6572290 |
aagaacgacgaaagaaatgctccagcaatcagctctgccatgatattgtggtcaaagccagagaggctcactgcaagatatatataaatatgttatcttc |
6572191 |
T |
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| Q |
111 |
tgttaagcaaaatagaacaagaactat |
137 |
Q |
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| T |
6572190 |
tgttaagcaaaatgaaacaagaactat |
6572164 |
T |
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