View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_high_6 (Length: 401)
Name: NF17697_high_6
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 4147945 - 4148321
Alignment:
| Q |
1 |
caaaggcaacaaaagttaaaataattagaaaaaagttacacataaaagacaccttagtgtcctaaagttcactttttacataagatgttgtttcaagtac |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
4147945 |
caaaggcaacaaaagttaaaataattagaagaaagttacacataaaagacactctagtgtactaaagttcactttttacacaagatgttgtttcaagtac |
4148044 |
T |
|
| Q |
101 |
tcacgtggcaacaatttaattaccgttgcatcaagactcctaaaatcacgacttatagaaagnnnnnnnn-ttaaaatcatgatttgaatatgtccttgt |
199 |
Q |
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|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4148045 |
tcacgtggcaacaacttaattacc-ttgcaccaagactcctaaaatcacgacttatagaaagaaaaaaaaattaaaatcatgatttgaatatgtccttgt |
4148143 |
T |
|
| Q |
200 |
ttttctccttaattataggtaatgtgtttcagttggccacaaaagctaagtttgtgggaaaactcgtggattcaatccacgcaaaacacacatataatat |
299 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4148144 |
ttttctccttaattataagtaatgtggttcagttggccacaaaagctaagtttgtgggaaaactcgtggattcaatccacacaaaacacacatataatat |
4148243 |
T |
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| Q |
300 |
actttgatgtgaataattatgtgcatttttccctcnnnnnnnnnnnnnttatgtgcattttcggtaacaatgaaaatatat |
380 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4148244 |
attttgatgtgaataattatgtgcatttttccctc---aaaaaaaaaattatgtgcattttcggtaacaatgaaaatatat |
4148321 |
T |
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