View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17697_low_1 (Length: 651)

Name: NF17697_low_1
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17697_low_1
NF17697_low_1
[»] chr2 (11 HSPs)
chr2 (2-477)||(6328866-6329337)
chr2 (486-553)||(1151641-1151708)
chr2 (486-537)||(13850076-13850127)
chr2 (486-553)||(34373120-34373187)
chr2 (486-554)||(40721882-40721950)
chr2 (486-553)||(27329001-27329068)
chr2 (486-554)||(43026047-43026115)
chr2 (486-537)||(37827677-37827728)
chr2 (486-537)||(38724209-38724260)
chr2 (487-537)||(25094480-25094530)
chr2 (488-537)||(9377652-9377701)
[»] chr1 (11 HSPs)
chr1 (486-554)||(43757697-43757765)
chr1 (486-554)||(37741844-37741912)
chr1 (486-553)||(49615167-49615234)
chr1 (490-553)||(31666102-31666165)
chr1 (486-537)||(40053034-40053085)
chr1 (486-550)||(27787604-27787668)
chr1 (486-553)||(46903582-46903649)
chr1 (488-553)||(8577396-8577461)
chr1 (486-550)||(644811-644875)
chr1 (486-554)||(6396438-6396506)
chr1 (486-554)||(21446110-21446178)
[»] chr8 (6 HSPs)
chr8 (486-554)||(32674124-32674192)
chr8 (486-554)||(38939084-38939152)
chr8 (488-537)||(34578231-34578280)
chr8 (486-553)||(28156315-28156382)
chr8 (486-553)||(5742549-5742616)
chr8 (488-554)||(42651031-42651097)
[»] chr7 (7 HSPs)
chr7 (486-554)||(47379671-47379739)
chr7 (486-553)||(640504-640571)
chr7 (493-551)||(33341024-33341082)
chr7 (486-553)||(2600426-2600493)
chr7 (486-553)||(37970045-37970112)
chr7 (488-551)||(41458794-41458857)
chr7 (486-534)||(11070359-11070407)
[»] chr3 (15 HSPs)
chr3 (486-554)||(1261267-1261335)
chr3 (486-554)||(38471753-38471821)
chr3 (486-553)||(2280289-2280356)
chr3 (486-537)||(16295592-16295643)
chr3 (486-554)||(9557824-9557892)
chr3 (486-554)||(14847410-14847478)
chr3 (486-550)||(42643352-42643416)
chr3 (486-537)||(884665-884716)
chr3 (486-553)||(29533873-29533940)
chr3 (488-554)||(33971994-33972060)
chr3 (486-537)||(33075001-33075052)
chr3 (488-537)||(27276862-27276911)
chr3 (486-551)||(34208381-34208446)
chr3 (488-537)||(47140569-47140618)
chr3 (488-553)||(50025579-50025644)
[»] scaffold0036 (1 HSPs)
scaffold0036 (486-537)||(54554-54605)
[»] chr4 (5 HSPs)
chr4 (486-553)||(9827877-9827944)
chr4 (486-537)||(6093497-6093548)
chr4 (486-537)||(34538058-34538109)
chr4 (486-537)||(36946984-36947035)
chr4 (488-554)||(4949128-4949194)
[»] chr5 (5 HSPs)
chr5 (486-553)||(3518295-3518362)
chr5 (486-553)||(10469839-10469906)
chr5 (486-537)||(29765959-29766010)
chr5 (486-553)||(31625968-31626035)
chr5 (488-553)||(8442271-8442336)
[»] scaffold0592 (1 HSPs)
scaffold0592 (490-537)||(1038-1085)
[»] scaffold0542 (1 HSPs)
scaffold0542 (486-537)||(2969-3020)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 2 - 477
Target Start/End: Complemental strand, 6329337 - 6328866
Alignment:
Q  2 attgaattcatttctatgggattaggtcacacgcaactttatcaactttttattctaacatagcaattgcttaagaacctaaaattaattcaacgatttc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6329337 attgaattcatttctatgggattaggtcacacgcaactttatcaactttttattctaacatagcaattgcttaagaacctaaaattaattcaacgagttc 6329238  T
Q  102 tcttatataagaaccaatcattcttacaagtcacattcacannnnnnnnnnnnnnnnatgcaaatcacattcactttatcttctcacttataacaagttc 201  Q
    |||||||||||||||||||||||||||||||||||||||||                |||||| ||||||||||||||||||||||||||||||||||||    
T  6329237 tcttatataagaaccaatcattcttacaagtcacattcacatttttttttttt----atgcaagtcacattcactttatcttctcacttataacaagttc 6329142  T
Q  202 ttagctataaccgagaaattaacgatagataatcttggaatattcgatgtttgagttaattagatcgtacacattcattggtaaatctgaataaatatct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6329141 ttagctataaccgagaaattaacgatagataatcttggaatattcgatgtttgagttaactagatcgtacacattcattggtaaatctgaataaatatct 6329042  T
Q  302 tttttcttttgaggaaaaatgtgtatcttttgggtaaaagtaaaaggacaatgattcttcgtacaaggcacacgtcttatcttagcttcatgtaccatgg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  6329041 tttttcttttgaggaaaaatgtgtatcttttgggtaaaagtaaaaggacaatgattcttcgtacaaggcacacatcttatcttagcttcatgtactatgg 6328942  T
Q  402 acaggtcagctcatcatccgaatccaaatatataggaaacgagtacactttggtctttgaattgaatgtggatcta 477  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6328941 acaggacagctcatcatccaaatccaaatatataggaaacgagtacactttggtctttgaattgaatgtggatcta 6328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 1151708 - 1151641
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||||||||||||| ||  ||| |||||||||||||||| || ||| ||||||||    
T  1151708 agtgatattttgacaactattttggtacaacctttgagacaactttgttgttctcttttttcattggt 1151641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 13850076 - 13850127
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  13850076 agtgatattttgacaactattttggtataacttttgagacaattttgttgtt 13850127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 34373187 - 34373120
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||||||  ||| |||||||||||||||| ||  |||||||||||    
T  34373187 agtgatattttgacaaccattttggtataacctttgagacaactttgttgttctctcttctcattggt 34373120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 40721950 - 40721882
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||| ||  ||||||||||||    
T  40721950 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtt 40721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 27329001 - 27329068
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||| ||||| ||||||||| |  |||| |||||||||||||||| || ||||||||||||    
T  27329001 agtgatattttaacaacaattttggtacatcttttgagacaactttgttgttctcttttctcattggt 27329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 43026115 - 43026047
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||  ||||||||| ||  ||| |||||||||||||||| ||  ||||||||||||    
T  43026115 agtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctctcttctcattggtt 43026047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 37827677 - 37827728
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||| |||| |||||||||| ||| ||| ||||||||||||||||    
T  37827677 agtgatattttaacaattattttggtacaatctttaagacaactttgttgtt 37827728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 38724209 - 38724260
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||| ||||||||| ||  ||| ||||||||||||||||    
T  38724209 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgtt 38724260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 25094530 - 25094480
Alignment:
Q  487 gtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    |||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||    
T  25094530 gtgatattttgacaaccattttagtacaatctttgagacaactttgttgtt 25094480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 9377652 - 9377701
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||| ||||| ||||||||||||  ||| ||||||||||||||||    
T  9377652 tgatattttaacaaccattttggtataacctttgagacaactttgttgtt 9377701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 43757765 - 43757697
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  || |||||||||    
T  43757765 agtgatattttgacaactattttggtataatttttgagacaactttgttgttctctcttttcattggtt 43757697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 37741844 - 37741912
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| |||||| || ||||||| |||||||||||||||| ||  ||||||||||||    
T  37741844 agtgatattttgacaaccattttgatacaatttttgagacaactttgttgttctctcttctcattggtt 37741912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 49615167 - 49615234
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||| ||| ||| |||||||||| ||||| || ||||||||||||    
T  49615167 agtgatattttgacaaccattttggtacaatctttgagacaactttattgttctcttttctcattggt 49615234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 553
Target Start/End: Original strand, 31666102 - 31666165
Alignment:
Q  490 atattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||||||||| ||  |||||||||||    
T  31666102 atattttgacaaccattttggtacaatctttgagacaactttgttgttctctcttctcattggt 31666165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 40053085 - 40053034
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  40053085 agtgatattttaacaactattttggtacaatctttgagacaactttgttgtt 40053034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 27787668 - 27787604
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcatt 550  Q
    ||||||| ||||||||| ||||||||| || |||| |||||||||||||||| ||  ||||||||    
T  27787668 agtgatagtttgacaaccattttggtacaacttttgagacaactttgttgttctctcttctcatt 27787604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 46903649 - 46903582
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||| ||||| ||||||||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  46903649 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggt 46903582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 553
Target Start/End: Original strand, 8577396 - 8577461
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||  |||||||||||||||||| ||||  |||||| |||||||| ||  |||||||||||    
T  8577396 tgatatttgaacaactattttggtataacttttgggacaaccttgttgttctctattctcattggt 8577461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 644875 - 644811
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcatt 550  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||| ||||| ||  ||||||||    
T  644875 agtgatattttgacaaccattttggtacaacatttgagacaactttattgttctctcttctcatt 644811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 6396506 - 6396438
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    |||||| |||||||||  ||||||||| ||  ||| |||||||||||||||| ||  ||||||||||||    
T  6396506 agtgatgttttgacaatcattttggtacaacatttgagacaactttgttgttctctcttctcattggtt 6396438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 21446110 - 21446178
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||| ||| ||||||||| ||  ||| |||||||||||||| | ||  ||||||||||||    
T  21446110 agtgatattttgataaccattttggtacaacctttgagacaactttgttgatctctcttctcattggtt 21446178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 32674124 - 32674192
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| ||||| ||| ||  ||| |||||||||||||||||||| ||||||||||||    
T  32674124 agtgatattttgacaaccattttagtacaacctttgagacaactttgttgttatcccttctcattggtt 32674192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 38939084 - 38939152
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |||||||||||| ||  ||||||||||||    
T  38939084 agtgatattttgacaaccattttggtacaatttttgagataactttgttgttctctcttctcattggtt 38939152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 34578231 - 34578280
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  34578231 tgatattttaacaactattttggtataatttttgggacaactttgttgtt 34578280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 28156382 - 28156315
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||||||||| ||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  28156382 agtgatattttgacaactattttagtacaacctttgagacaactttgttgttctctcttctcattggt 28156315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 5742549 - 5742616
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||| |   ||| |||||||||||||||| ||  |||||||||||    
T  5742549 agtgatattttgacaaccattttggtacatcctttgagacaactttgttgttctctcttctcattggt 5742616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 554
Target Start/End: Complemental strand, 42651097 - 42651031
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||  ||||||||||||||| || |||| ||||||| |||||||| ||  ||||||||||||    
T  42651097 tgatatttgaacaactattttggtacaacttttgagacaaccttgttgttctctcttctcattggtt 42651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 47379739 - 47379671
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||||||||||||  || |||| |||||||||||||||| ||  ||||||||||||    
T  47379739 agtgatattttgacaactattttggtgcaacttttgagacaactttgttgttctctcttctcattggtt 47379671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 640571 - 640504
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||  ||||||||||||| ||| |||||||||||||||| ||  |||||||||||    
T  640571 agtgatattttgacaatcattttggtataatctttgagacaactttgttgttctctcttctcattggt 640504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 33341024 - 33341082
Alignment:
Q  493 ttttgacaactattttggtataattttttagacaactttgttgttatcctttctcattg 551  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| | | |||||||||    
T  33341024 ttttgacaactattttggtataatgtttgagacaactttgttgttttaccttctcattg 33341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 2600426 - 2600493
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  2600426 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggt 2600493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 37970112 - 37970045
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||| ||||| ||||||||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  37970112 agtgatattttaacaaccattttggtacaacatttgagacaactttgttgttctctcttctcattggt 37970045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 551
Target Start/End: Original strand, 41458794 - 41458857
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattg 551  Q
    ||||||||||||||  ||||||||| || |||| |||||||||||||||| || ||| ||||||    
T  41458794 tgatattttgacaatcattttggtacaacttttgagacaactttgttgttctcttttttcattg 41458857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 11070407 - 11070359
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgtt 534  Q
    ||||||||||||||||  ||||||||| ||| ||| |||||||||||||    
T  11070407 agtgatattttgacaatcattttggtagaatctttgagacaactttgtt 11070359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 1261267 - 1261335
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| || ||| || |||||||||||||||||||||||| ||  ||||||||||||    
T  1261267 agtgatattttgacaaccatgttgatacaattttttagacaactttgttgttttctcttctcattggtt 1261335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 38471821 - 38471753
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    |||||||||||||||| |||||||||| ||| ||| |||||||||||||||| ||  ||||||||||||    
T  38471821 agtgatattttgacaattattttggtacaatctttgagacaactttgttgttctctcttctcattggtt 38471753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 2280356 - 2280289
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||| ||| ||| |||||||||||||||| ||  |||||||||||    
T  2280356 agtgatattttgacaaccattttggtacaatctttgagacaactttgttgttctctcttctcattggt 2280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 16295643 - 16295592
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  16295643 agtgatattttgacaactattttggtacaacttttgagacaactttgttgtt 16295592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 9557824 - 9557892
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    |||||||||||||||| |||||||||| || |||| |||||| ||||||||| ||  ||||||||||||    
T  9557824 agtgatattttgacaattattttggtacaacttttgagacaattttgttgttctctcttctcattggtt 9557892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 14847410 - 14847478
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||||||||| ||||||||| ||  |||||||||||||||||||| |   ||||||||||||    
T  14847410 agtgatattttgacaaccattttggtacaaccttttagacaactttgttgttctatcttctcattggtt 14847478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 42643416 - 42643352
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcatt 550  Q
    ||||||||||||||||| |||||| |||||||||| |||||| ||||||||| ||  ||||||||    
T  42643416 agtgatattttgacaaccattttgatataatttttgagacaattttgttgttctctcttctcatt 42643352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 884716 - 884665
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||| ||||||||||||||||||||||| ||| || |||||||||    
T  884716 agtgatattttaacaactattttggtataatttttgagagaattttgttgtt 884665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 29533940 - 29533873
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||  ||||||||| || |||| |||||||||||||||| ||  |||||||||||    
T  29533940 agtgatattttgacaatcattttggtacaacttttgagacaactttgttgttctctcttctcattggt 29533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 554
Target Start/End: Complemental strand, 33972060 - 33971994
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||  ||||||||||||||| ||||||| ||||||| |||||||| ||  ||||||||||||    
T  33972060 tgatatttgaacaactattttggtacaatttttgagacaaccttgttgttctctcttctcattggtt 33971994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 33075052 - 33075001
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||| ||| ||  ||| ||||||||||||||||    
T  33075052 agtgatattttgacaactattttagtacaacctttgagacaactttgttgtt 33075001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 537
Target Start/End: Complemental strand, 27276911 - 27276862
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||  ||||||||||||||| ||||||| ||||||| ||||||||    
T  27276911 tgatatttgaacaactattttggtacaatttttgagacaaccttgttgtt 27276862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 551
Target Start/End: Complemental strand, 34208446 - 34208381
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattg 551  Q
    |||||||||||||||| ||||||  || ||||||| ||||||||||||| || ||  |||||||||    
T  34208446 agtgatattttgacaattattttaatacaatttttgagacaactttgtttttctctcttctcattg 34208381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 47140569 - 47140618
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  47140569 tgatattttgagaaccattttggtacaacttttgagacaactttgttgtt 47140618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 553
Target Start/End: Original strand, 50025579 - 50025644
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||| ||||| ||||||||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  50025579 tgatattttcacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggt 50025644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 54554 - 54605
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  54554 agtgatattttgacaactattttggtacaatctttgagacaactttgttgtt 54605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 9827877 - 9827944
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||  ||||||||||||  ||| |||||||||||||||||||  |||||||||||    
T  9827877 agtgatattttgacaatcattttggtataacctttgagacaactttgttgttatctcttctcattggt 9827944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 6093497 - 6093548
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| |||||||||    
T  6093497 agtgatattttaacaactattttggtataatctttgagacaattttgttgtt 6093548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 34538109 - 34538058
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  34538109 agtgatattttgacaactattttggtacaacctttgagacaactttgttgtt 34538058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 36946984 - 36947035
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||| |||||| |||||||||| ||| || |||||||||    
T  36946984 agtgatattttgacaaccattttgatataatttttgagataattttgttgtt 36947035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 4949128 - 4949194
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggtt 554  Q
    ||||||||||| ||| ||||||||| || |||| |||||||||||||||| |   ||||||||||||    
T  4949128 tgatattttgataaccattttggtacaacttttgagacaactttgttgttctttcttctcattggtt 4949194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 3518362 - 3518295
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||| ||  |||||||||||    
T  3518362 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggt 3518295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 10469839 - 10469906
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||  ||||||||| ||| ||| |||||||||||||||| ||  |||||||||||    
T  10469839 agtgatattttgacaatcattttggtacaatctttgagacaactttgttgttctctcttctcattggt 10469906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 29766010 - 29765959
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||||||| ||  ||| ||| ||||||||||||    
T  29766010 agtgatattttgacaactattttggtacaacctttgagataactttgttgtt 29765959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 553
Target Start/End: Original strand, 31625968 - 31626035
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||||||||||| ||||| ||| || |||| |||||||||| ||||| ||  |||||||||||    
T  31625968 agtgatattttgacaaccattttagtacaacttttaagacaactttattgttctctcttctcattggt 31626035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 553
Target Start/End: Complemental strand, 8442336 - 8442271
Alignment:
Q  488 tgatattttgacaactattttggtataattttttagacaactttgttgttatcctttctcattggt 553  Q
    ||||||||  |||||||||||||||||||||||   |||| ||||||||| ||  |||||||||||    
T  8442336 tgatatttgaacaactattttggtataatttttggaacaattttgttgttctctcttctcattggt 8442271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 1085 - 1038
Alignment:
Q  490 atattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||| || |||| ||| ||||||||||||    
T  1085 atattttgacaactattttggtacaacttttgagataactttgttgtt 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 537
Target Start/End: Complemental strand, 3020 - 2969
Alignment:
Q  486 agtgatattttgacaactattttggtataattttttagacaactttgttgtt 537  Q
    ||||||||||||||||||||||||||||||| ||| ||| || ||| |||||    
T  3020 agtgatattttgacaactattttggtataatctttgagataatttttttgtt 2969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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