View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_low_10 (Length: 313)
Name: NF17697_low_10
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 50506075 - 50506285
Alignment:
| Q |
14 |
aacctgtgttatataattaaagcaattattatattatttaagcacgttttgattttaaatctcatgatatgtggttatttaaccggtggtatagtagtcc |
113 |
Q |
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| T |
50506075 |
aacctatgttatataattaaagcaattattatattatttaagcacgttttgattttaaatctcatgatatgtggttatttaaccggtggtatagtagtcc |
50506174 |
T |
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| Q |
114 |
ggcccggcccttagcaagtgcaaggcgagctaaatagttgattcacacaattttgggacctcaaattttttattttgttaatataaagaccaaatgtatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50506175 |
ggcccggcccttagcaagtgcaaggcgagctaaatagttggttcacacaattttgggacctcaaattttttattttgttaatataaagaccaaatgtatt |
50506274 |
T |
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| Q |
214 |
agttgtatatc |
224 |
Q |
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||||||||||| |
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| T |
50506275 |
agttgtatatc |
50506285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 50506311 - 50506360
Alignment:
| Q |
250 |
taggcatctcacaatggttcaatgttaaaccaaaaatgtgggattgaact |
299 |
Q |
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| T |
50506311 |
taggcatctcacaatggttcaatgttaaaccaaaaatgtgggattgaact |
50506360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 50506441 - 50506484
Alignment:
| Q |
255 |
atctcacaatggttcaatgttaaaccaaaaatgtgggattgaact |
299 |
Q |
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| T |
50506441 |
atctcacaatggttcaatgttaaa-caaaaatgtgggattgaact |
50506484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 10786747 - 10786537
Alignment:
| Q |
14 |
aacctgtgttatataattaaagcaattattatattatttaagcacgttttgattttaaatctcatgatatgtggttatttaaccggtggtatagtagtcc |
113 |
Q |
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| T |
10786747 |
aacctatgttgtataattaaaaaagttattatattatttaaacacgttttaattttaaagctcatgatatgtggttatttaaccggtggtatagtagtca |
10786648 |
T |
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| Q |
114 |
ggcccggcccttagcaagtgcaaggcgagctaaatagttgattcacacaattttgggacctcaaattttttattttgttaatataaagaccaaatgtatt |
213 |
Q |
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| T |
10786647 |
ggcccgacccttagcaagtgtaaggcgagctaaatagttggttcccaaaattttgggatctcaaat-ttttattttgttaatataaagaccaaaggtatt |
10786549 |
T |
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| Q |
214 |
agttgtatatcg |
225 |
Q |
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|||| ||||||| |
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| T |
10786548 |
agttatatatcg |
10786537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 10786507 - 10786473
Alignment:
| Q |
250 |
taggcatctcacaatggttcaatgttaaaccaaaa |
284 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10786507 |
taggcatctcacaatggttcaatgttaaaccaaaa |
10786473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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