View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_low_2 (Length: 618)
Name: NF17697_low_2
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 225 - 609
Target Start/End: Original strand, 28727874 - 28728253
Alignment:
| Q |
225 |
caggtgagtcaatcatcttcagctcaaactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatggct |
324 |
Q |
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| T |
28727874 |
caggtgagtcaatcatcttcaactcaaactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatggct |
28727973 |
T |
|
| Q |
325 |
tactttatagaactaattacttgcttcttttattttaagaatattgattagtacttagggtgtttttggtgtggatgaacttaattgtaaacagtttctc |
424 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28727974 |
tactttatagaattaattacttgcttcttttattttaagaatattgattagtacttagggtgtttttggtgtggataaacttaattgtaaacagtttctc |
28728073 |
T |
|
| Q |
425 |
tagcttcttttattttcttgtagcttatgaacgaacttgatcaatcgtttccaagatatccttgttatgggtacaagtgtttctgtaattctgattcatt |
524 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28728074 |
ta--tttgtttattttcttgtagcttatgaacgaacttgatcaatcgtttccaagatatccttgttatgggtacaagtgtttctgtaattctgattcatt |
28728171 |
T |
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| Q |
525 |
atgtcttccgttagaaaaaggggtaattctgtagtaccatttctactttctcctttaccattttcaatttttattttatattctt |
609 |
Q |
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| T |
28728172 |
atgtcttccattagaaaaa---gctctgcagtagtaccatttctactttctcctttaccattttcaatttttattttattttctt |
28728253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 396 - 609
Target Start/End: Original strand, 28734294 - 28734504
Alignment:
| Q |
396 |
tggatgaacttaattgtaaacagtttctctagcttcttttattttcttgtagcttatgaacgaacttgatcaatcgtttccaagata---tccttgttat |
492 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| || || ||||||| |
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| T |
28734294 |
tggataaacttaattgtaaacagtttctctg------tttattttcttgaagcttatgaacgaatttgatcaatcgtttccaagttagcatctttgttat |
28734387 |
T |
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| Q |
493 |
gggtacaagtgtttctgtaattctgattcattatgtcttccgttagaaaaaggggtaattctgtagtaccatttctactttctcctttaccattttcaat |
592 |
Q |
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|||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
28734388 |
gggtacaagtatttctgtagttttaattcattatgtcttccgttagaaaaaggggtaattctgtagtaccatttctactttttcctttaccatttacaat |
28734487 |
T |
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| Q |
593 |
ttttattttatattctt |
609 |
Q |
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||||||||||| ||||| |
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| T |
28734488 |
ttttattttattttctt |
28734504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 225 - 406
Target Start/End: Original strand, 28734088 - 28734271
Alignment:
| Q |
225 |
caggtgagtcaatcatcttcagctcaaactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatggct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734088 |
caggtgagtcaatcatcttcagctcaaactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatggct |
28734187 |
T |
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| Q |
325 |
tac--tttatagaactaattacttgcttcttttattttaagaatattgattagtacttagggtgtttttggtgtggatgaactt |
406 |
Q |
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||| ||||||||| |||||||||||||||||||||||| ||| || ||||| || ||||||| |||||||| ||||| ||||| |
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| T |
28734188 |
tactttttatagaattaattacttgcttcttttattttaggaaaatggattattatttagggtttttttggtatggataaactt |
28734271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 28733881 - 28733991
Alignment:
| Q |
21 |
tgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtca |
120 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
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| T |
28733881 |
tgaagtgacatttctcagtatagattatcttccattttgattttcttctactttgataggaacaaggattaatcaaaacaaatgtaaatcttagtcgtca |
28733980 |
T |
|
| Q |
121 |
ccaatcttgta |
131 |
Q |
| |
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||||||||||| |
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| T |
28733981 |
ccaatcttgta |
28733991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 28727670 - 28727779
Alignment:
| Q |
21 |
tgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtca |
120 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
28727670 |
tgaagtgacatttctcagtatagattatcttcaattttcattttcttctactt-gagagaaacaaggattgatcaaaacaaatgtaagtctttgttgtcg |
28727768 |
T |
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| Q |
121 |
ccaatcttgta |
131 |
Q |
| |
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||||||||||| |
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| T |
28727769 |
ccaatcttgta |
28727779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 28725386 - 28725518
Alignment:
| Q |
225 |
caggtgagtcaatcatcttcagctca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatgg |
322 |
Q |
| |
|
|||||| |||||| ||||||| |||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||||||| |
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| T |
28725386 |
caggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaagatgg |
28725484 |
T |
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| Q |
323 |
cttactttatagaactaattacttgcttctttta |
356 |
Q |
| |
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|||||||| ||||| ||||| ||||||||||||| |
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| T |
28725485 |
cttactttgtagaattaattgcttgcttctttta |
28725518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 361
Target Start/End: Original strand, 32281075 - 32281206
Alignment:
| Q |
229 |
tgagtcaatcatcttcagctcaaactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaagatggcttact |
328 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||| |||||||||||| || || || || ||||||||| ||||| ||| |||||||||||| || |
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| T |
32281075 |
tgagtgaatcatcttcaactcaaactatctagaacattattgaatggagacaattatcgtccaagaatttaatcatattttctggtgaagatggctttct |
32281174 |
T |
|
| Q |
329 |
ttatagaactaattacttgcttcttttatttta |
361 |
Q |
| |
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||||| ||||| | ||||||| |||||||||| |
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| T |
32281175 |
ttatatgactaa-tccttgcttattttatttta |
32281206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 32280896 - 32280992
Alignment:
| Q |
22 |
gaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtc |
119 |
Q |
| |
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||||| ||||||| | ||||||||||||| |||||| |||| ||||||| | || ||||||||||||| ||||||| ||||| |||||||| ||||| |
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| T |
32280896 |
gaagtaacatttcacaatatagattatctttcattttcatttgcttctacat-gagaggaacaaggattaatcaaaataaatgcaagtctttatcgtc |
32280992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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