View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_low_3 (Length: 608)
Name: NF17697_low_3
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 34669501 - 34669317
Alignment:
| Q |
184 |
tcagatacccgccattggagaggtgaggtgggggccacgtgaaggcgaaggagccatcaacagaaacaggaatttcatcaatcaaagggtaatcgaaaag |
283 |
Q |
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| T |
34669501 |
tcagatacccgccattggagaggtgaggtgggggccacgtgaaggcaaaggagccatcaacagaaacaggaatttcatcaatcaaagggtaatcgaaaag |
34669402 |
T |
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| Q |
284 |
ccaattggtgttttccggggaaaccatagttgggtggaattttcccggaaaattgtgaattttcccggcggtgaagaaatgaaag |
368 |
Q |
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| T |
34669401 |
ccaattggtgttttccggggaaaccatagttgggtggaattttcccggaaaattgtgaattttcccggcggtgaagaaatgaaag |
34669317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 522 - 608
Target Start/End: Complemental strand, 34669157 - 34669071
Alignment:
| Q |
522 |
atggtaataataaaatgggaatctaatgcttatgcgtttgagagtgagtgatgtgacaagatacgaagaaaatggaaattttttgtt |
608 |
Q |
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| T |
34669157 |
atggtaataataaaatgggaatctaatgcttatgcgtttgagagtgagtgatgtgacaagatacgaagaaaatggaaattttttgtt |
34669071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 34669263 - 34669189
Alignment:
| Q |
417 |
caaatgaagtgagagagtgatgattgaagttgaaaaaatgaaaaccacgtttaagggtagagaaaaaaggagtgg |
491 |
Q |
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| T |
34669263 |
caaatgaagtgagagagtgatgattgaagttgaaaaaatgaaaaccacgtttaagggtggagaaaaaaagagtgg |
34669189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34669684 - 34669637
Alignment:
| Q |
1 |
caaaacataacaaataactgaacaccaatgaaaaccacaacaatttat |
48 |
Q |
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| T |
34669684 |
caaaacataacaaataactgaacaccaatgaaaaccacaacaatttat |
34669637 |
T |
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