View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_low_5 (Length: 533)
Name: NF17697_low_5
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 44695398 - 44695907
Alignment:
| Q |
16 |
taatcttcatcgtaatttacgttcaattccacccttgatttaaataatcgatatgatttagtatttaaatgattcaaacttgactaaaagatagaaaatg |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44695398 |
taatcttcattgtaatttacgttcaattccacccttgatttaaataattgatatgatttagtatttaaatgattcaaacttgactaaaagatagaaaaag |
44695497 |
T |
|
| Q |
116 |
gaatgatgggagaaagtttgaaaaatttgaggactaaatcattgaatcattcagtaagaaatcaatgagcaaaatatcagtttgctcattcatttgttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695498 |
gaatgatgggagaaagtttgaaaaatttgaggactaaatcattgaatcattcagtaagaaatcaatgagcaaaatatcagtttgctcattcatttgttat |
44695597 |
T |
|
| Q |
216 |
ccatacttccaacagaataacatttggctnnnnnnnnnnnnnnnn-tagtttcaaccatatgtagaaaaataaaagtaaaggattaagcctatgtttgga |
314 |
Q |
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| T |
44695598 |
ccatacttccaacagaataacatttggctaaaaaagaaaaaaaaaatagtttcaaccatatgtagaaaaataaaagtaaaggattaagcctatgtttgga |
44695697 |
T |
|
| Q |
315 |
tccgcggtagccatctcattcttgcaatctaaaacagttttcaccgatcaccgcagttccaaacataagctaagttgatgttcacaatacctttacaaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695698 |
tccgcggtagccatctcattcttgcaatctaaaacagttttcaccgatcaccacagttccaaacataagctaagttgatgttcacaatacctttacaaga |
44695797 |
T |
|
| Q |
415 |
gaagcctgcattccaatccatgaattggtagtgaaagtgaataggtgattgattaacatagtccttgtaaagaacatctaataaaaaataaacaattatt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695798 |
gaagcctgcattccaatccatgaattggtagtgaaagtgaataggtgattgattaacatagtccttgtaaagaacatctaataaaaaataaacaattatt |
44695897 |
T |
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| Q |
515 |
tcagtataat |
524 |
Q |
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|||||||||| |
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| T |
44695898 |
tcagtataat |
44695907 |
T |
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