View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17697_low_6 (Length: 515)
Name: NF17697_low_6
Description: NF17697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17697_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 41798666 - 41798462
Alignment:
| Q |
16 |
aatatttgttcttgaaaggtnnnnnnnttgtgaatttgatggttctgccttgtgagcactctagggatgatacaagaatgaggaaatagagaatnnnnnn |
115 |
Q |
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| T |
41798666 |
aatatttgttcttgaaaggtaaaaaa-ttgtgaatttgatggttctgccttgcgagcactctagggatgatacaagaatgaggaaataaagaataaaaaa |
41798568 |
T |
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| Q |
116 |
nngacgatgaagtagaataagaagattgaaacgtgtggaattggtactaactttgaacatttaaaaaatttaaatttgatttgattcaacatatgctacc |
215 |
Q |
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| T |
41798567 |
aagacgatgaagtagaataagaagattgaaacgtgtggaattggtactaactttgaacatttaaaaaatttaaatttgatttgattcaacatatgctacc |
41798468 |
T |
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| Q |
216 |
agcggt |
221 |
Q |
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| |||| |
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| T |
41798467 |
aacggt |
41798462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 391 - 509
Target Start/End: Complemental strand, 41798284 - 41798163
Alignment:
| Q |
391 |
tatcatagatacgatgatatactcgtggacagttcaaaatctttggattatgttacctgcttagtaaatacacacatatatgaacttatc---caagaca |
487 |
Q |
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| T |
41798284 |
tatcatagatacgatgatatactcgtggacagttcaaaatctttggattatcttacctgcttagtaaatacacacatatatgaacttatccaacaagaca |
41798185 |
T |
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| Q |
488 |
aacacatatatcatattcttcg |
509 |
Q |
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| T |
41798184 |
aacatatatatcatattattcg |
41798163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 41798430 - 41798374
Alignment:
| Q |
253 |
gaaggaaacacaaacatgaacaaatggaataatcttgaatgtgatgaacttttgttg |
309 |
Q |
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| T |
41798430 |
gaaggaaacacaaacatgaagaaatggaataatcttgaatgtgatgaacttttgttg |
41798374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 3380069 - 3379949
Alignment:
| Q |
43 |
ttgtgaatttgatggttctgccttgtgagcactctagggatgatacaagaatgaggaa-atagag-aatnnnnnnnngacgatgaagtagaataagaaga |
140 |
Q |
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| T |
3380069 |
ttgtgagttcgatggttgtggcttgtgagcactctagggataatagaagaatgaggaatatagaataataaaaaaaagatgatgaagtagaataagaaga |
3379970 |
T |
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| Q |
141 |
ttgaaacgtgtggaattggta |
161 |
Q |
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| T |
3379969 |
ttgaaacgtgtggaattggta |
3379949 |
T |
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