View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_10 (Length: 421)
Name: NF17698_high_10
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 16757905 - 16758022
Alignment:
| Q |
1 |
gaaagaatgttcatgaagagacatgaacaatatggagaaaagaggacaatggcaatggaatttagaaaatgcaccaactctgctaagtgaaatgtgagga |
100 |
Q |
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| T |
16757905 |
gaaagaatgttcatgaagagacatgaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaaatatgagga |
16758004 |
T |
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| Q |
101 |
cagaagataaaaggttag |
118 |
Q |
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| T |
16758005 |
cacaaggtaataggttag |
16758022 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 32548624 - 32548539
Alignment:
| Q |
304 |
aaattaaagagtatgtgtgattttcaattagagtgaagtcatgttgctagtgagggccttggtctagtctctcatgctgaggtttcaa |
391 |
Q |
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| T |
32548624 |
aaattaaagagtatgtttgattctgagttagagtgaagtcatattgttagtga--gccttgggcaagtctctgatactgaggtctcaa |
32548539 |
T |
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