View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17698_high_14 (Length: 346)

Name: NF17698_high_14
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17698_high_14
NF17698_high_14
[»] chr5 (10 HSPs)
chr5 (103-319)||(31601096-31601296)
chr5 (196-307)||(31600448-31600559)
chr5 (27-75)||(18831371-18831419)
chr5 (27-79)||(19052241-19052293)
chr5 (22-75)||(18938727-18938780)
chr5 (27-79)||(24659185-24659237)
chr5 (22-65)||(34129476-34129519)
chr5 (27-65)||(16522746-16522784)
chr5 (27-65)||(23388421-23388459)
chr5 (34-67)||(18207451-18207484)
[»] chr8 (29 HSPs)
chr8 (196-319)||(38443034-38443157)
chr8 (196-327)||(38443543-38443667)
chr8 (196-307)||(42578709-42578819)
chr8 (195-317)||(41889322-41889444)
chr8 (248-319)||(44870159-44870230)
chr8 (235-308)||(10910970-10911043)
chr8 (199-307)||(42503029-42503136)
chr8 (196-270)||(6462610-6462684)
chr8 (196-270)||(17625634-17625708)
chr8 (206-276)||(44870829-44870899)
chr8 (28-73)||(6885861-6885906)
chr8 (20-75)||(28275956-28276011)
chr8 (206-264)||(17943014-17943072)
chr8 (196-308)||(11519350-11519462)
chr8 (27-63)||(27660224-27660260)
chr8 (195-306)||(7870332-7870442)
chr8 (206-265)||(17626348-17626407)
chr8 (37-72)||(21315523-21315558)
chr8 (196-307)||(38443695-38443805)
chr8 (196-307)||(42503880-42503990)
chr8 (27-65)||(2637899-2637937)
chr8 (27-65)||(17997400-17997438)
chr8 (27-65)||(23892383-23892421)
chr8 (22-63)||(23868702-23868743)
chr8 (22-63)||(25226960-25227001)
chr8 (27-63)||(13314163-13314199)
chr8 (196-308)||(17938175-17938286)
chr8 (33-65)||(24722836-24722868)
chr8 (33-65)||(25181612-25181644)
[»] chr1 (27 HSPs)
chr1 (196-328)||(49385085-49385217)
chr1 (196-319)||(49385729-49385851)
chr1 (22-79)||(26648185-26648242)
chr1 (235-311)||(2428461-2428537)
chr1 (196-295)||(1764516-1764614)
chr1 (248-317)||(15667604-15667673)
chr1 (196-317)||(15668227-15668348)
chr1 (196-273)||(27890568-27890645)
chr1 (22-79)||(15812302-15812358)
chr1 (196-273)||(27891278-27891355)
chr1 (22-75)||(44796266-44796319)
chr1 (196-307)||(7338757-7338867)
chr1 (27-65)||(18735425-18735463)
chr1 (27-65)||(25403265-25403303)
chr1 (27-64)||(21985193-21985230)
chr1 (27-63)||(12209468-12209504)
chr1 (27-67)||(26021605-26021645)
chr1 (27-65)||(728348-728386)
chr1 (27-65)||(14781037-14781075)
chr1 (27-65)||(18826535-18826573)
chr1 (27-64)||(21333934-21333971)
chr1 (199-260)||(49399549-49399610)
chr1 (196-264)||(2367543-2367611)
chr1 (27-63)||(13267035-13267071)
chr1 (27-63)||(15159688-15159724)
chr1 (31-79)||(18528397-18528445)
chr1 (196-260)||(49400291-49400355)
[»] chr3 (35 HSPs)
chr3 (196-307)||(8923584-8923695)
chr3 (196-327)||(8922884-8923015)
chr3 (190-319)||(34328382-34328511)
chr3 (196-308)||(41325822-41325934)
chr3 (206-319)||(1772877-1772989)
chr3 (230-319)||(7267434-7267523)
chr3 (195-308)||(50107567-50107680)
chr3 (220-319)||(10991028-10991127)
chr3 (196-307)||(41326498-41326608)
chr3 (196-307)||(50108256-50108363)
chr3 (224-308)||(1773592-1773676)
chr3 (196-319)||(34329069-34329196)
chr3 (191-270)||(52103603-52103682)
chr3 (196-270)||(23514480-23514554)
chr3 (22-75)||(16222255-16222308)
chr3 (27-65)||(41509359-41509397)
chr3 (196-273)||(16436524-16436601)
chr3 (27-75)||(3115569-3115617)
chr3 (27-67)||(25851861-25851901)
chr3 (27-65)||(12805359-12805397)
chr3 (22-75)||(5509230-5509283)
chr3 (27-64)||(8116129-8116166)
chr3 (201-270)||(40810280-40810349)
chr3 (245-298)||(46461912-46461964)
chr3 (34-65)||(2166846-2166877)
chr3 (27-62)||(20430645-20430680)
chr3 (220-318)||(17057127-17057224)
chr3 (27-65)||(20122166-20122204)
chr3 (27-65)||(27413508-27413546)
chr3 (235-315)||(10987867-10987948)
chr3 (196-269)||(55444576-55444649)
chr3 (36-64)||(3430125-3430153)
chr3 (27-71)||(19171002-19171046)
chr3 (197-265)||(35903690-35903758)
chr3 (196-240)||(44312393-44312437)
[»] chr7 (32 HSPs)
chr7 (196-310)||(48204147-48204261)
chr7 (219-311)||(48204926-48205018)
chr7 (210-319)||(18923387-18923496)
chr7 (196-318)||(35753012-35753137)
chr7 (27-79)||(9131699-9131750)
chr7 (199-270)||(16981243-16981314)
chr7 (27-73)||(39272331-39272377)
chr7 (22-75)||(1585435-1585488)
chr7 (22-75)||(2573825-2573878)
chr7 (22-75)||(19154109-19154162)
chr7 (22-75)||(20753508-20753561)
chr7 (195-308)||(43844793-43844905)
chr7 (27-65)||(8318360-8318398)
chr7 (222-272)||(32492585-32492635)
chr7 (22-67)||(5107536-5107581)
chr7 (22-63)||(8978170-8978211)
chr7 (206-318)||(35752336-35752446)
chr7 (201-264)||(4126698-4126761)
chr7 (22-65)||(9256904-9256947)
chr7 (22-65)||(9313303-9313346)
chr7 (27-65)||(8053283-8053321)
chr7 (27-65)||(8878179-8878217)
chr7 (201-263)||(10270865-10270927)
chr7 (245-311)||(18948208-18948273)
chr7 (206-260)||(22492506-22492560)
chr7 (220-298)||(23752766-23752843)
chr7 (206-308)||(43845845-43845946)
chr7 (220-281)||(39020957-39021018)
chr7 (196-264)||(5956439-5956507)
chr7 (196-264)||(5960993-5961061)
chr7 (27-63)||(17077951-17077987)
chr7 (222-270)||(46164426-46164474)
[»] chr6 (16 HSPs)
chr6 (191-319)||(3295742-3295870)
chr6 (286-327)||(3295113-3295154)
chr6 (27-65)||(20005088-20005126)
chr6 (27-65)||(20144263-20144301)
chr6 (27-65)||(22188538-22188576)
chr6 (29-66)||(8065866-8065903)
chr6 (22-79)||(9517623-9517680)
chr6 (30-79)||(14638452-14638501)
chr6 (22-75)||(22409480-22409533)
chr6 (27-67)||(1635855-1635895)
chr6 (196-308)||(6829946-6830057)
chr6 (196-264)||(34260116-34260184)
chr6 (27-70)||(27123714-27123757)
chr6 (27-65)||(21840961-21840999)
chr6 (196-308)||(6826558-6826669)
chr6 (248-296)||(10838144-10838192)
[»] chr4 (20 HSPs)
chr4 (195-318)||(39311319-39311441)
chr4 (196-265)||(5469963-5470032)
chr4 (196-296)||(45621844-45621935)
chr4 (196-308)||(36385774-36385886)
chr4 (206-296)||(45620878-45620962)
chr4 (196-286)||(36386013-36386103)
chr4 (196-273)||(55633554-55633631)
chr4 (22-63)||(7583191-7583232)
chr4 (196-297)||(39310396-39310496)
chr4 (197-297)||(24484784-24484883)
chr4 (196-260)||(52237635-52237699)
chr4 (196-260)||(52238314-52238378)
chr4 (40-79)||(17336204-17336242)
chr4 (28-63)||(19560373-19560408)
chr4 (27-57)||(20829005-20829035)
chr4 (22-63)||(15165649-15165690)
chr4 (228-297)||(48956669-48956737)
chr4 (33-65)||(11781740-11781772)
chr4 (34-70)||(17217759-17217795)
chr4 (27-67)||(17672885-17672925)
[»] chr2 (19 HSPs)
chr2 (196-297)||(34228147-34228248)
chr2 (196-297)||(34229043-34229143)
chr2 (191-265)||(41282629-41282702)
chr2 (30-79)||(19199313-19199362)
chr2 (196-297)||(35029829-35029930)
chr2 (196-265)||(41282955-41283024)
chr2 (27-75)||(22568482-22568530)
chr2 (248-318)||(10148561-10148630)
chr2 (209-270)||(1233713-1233774)
chr2 (22-75)||(13777319-13777372)
chr2 (196-318)||(39062847-39062968)
chr2 (207-273)||(41993340-41993406)
chr2 (27-79)||(20171788-20171839)
chr2 (196-260)||(33361047-33361111)
chr2 (40-75)||(15340158-15340193)
chr2 (248-314)||(10147838-10147903)
chr2 (27-63)||(17674879-17674915)
chr2 (27-63)||(18552441-18552477)
chr2 (34-70)||(22378699-22378735)
[»] scaffold0178 (1 HSPs)
scaffold0178 (196-265)||(18481-18550)
[»] scaffold0402 (1 HSPs)
scaffold0402 (196-264)||(10856-10924)
[»] scaffold0054 (1 HSPs)
scaffold0054 (27-65)||(72930-72968)
[»] scaffold0134 (1 HSPs)
scaffold0134 (27-63)||(12160-12196)
[»] scaffold0032 (1 HSPs)
scaffold0032 (27-70)||(102558-102601)
[»] scaffold0451 (1 HSPs)
scaffold0451 (27-61)||(4916-4950)
[»] scaffold0016 (1 HSPs)
scaffold0016 (27-65)||(4009-4047)
[»] scaffold0671 (1 HSPs)
scaffold0671 (20-65)||(2570-2615)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 103 - 319
Target Start/End: Complemental strand, 31601296 - 31601096
Alignment:
Q  103 cgcatgtcagaaagcgctaggtgcttcaggcttgctaagccatgcacccgacgtttattctatgcgctaggaggtttataaagcgccttaatagagtcca 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||    
T  31601296 cgcatgtcagaaagcgctaggcgcttcaggcttgctaagccatgcacccgacgtttatt-tatgcgctaggaggtttataagccgccttaatggagtcca 31601198  T
Q  203 tcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttg 302  Q
    ||               |||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||    
T  31601197 tc---------------tttgctccatttaccccatttgctatcatggatgtgtgacatgtggtaaaatagaaaaccaagggctgagattaaacgggttg 31601113  T
Q  303 gaaaaaacacttgtttt 319  Q
    |||||| ||||||||||    
T  31601112 gaaaaagcacttgtttt 31601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 31600448 - 31600559
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||||||||  |||||||||||   ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  31600448 gagtccatccatgctccatttagacttgctccatttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaaccaagggatgagattaaa 31600547  T
Q  296 agtgttggaaaa 307  Q
    || |||||||||    
T  31600548 agggttggaaaa 31600559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 18831371 - 18831419
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  18831371 taggccctgtcacaacttaagtatctaatctagggttgcgtctactaca 18831419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 19052241 - 19052293
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  19052241 taggctctgtcaaaacctaagtatctaatctagggttgcacctactacaaaaa 19052293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 18938727 - 18938780
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| ||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  18938727 aatgttaggcccggtcacaacctaagtatctaatctagggttgtgactactaca 18938780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 24659237 - 24659185
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  24659237 taggccctgtcacaacctaagtacctaatctagggttgcacctatcacaaaaa 24659185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 34129476 - 34129519
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  34129476 aatgttaggccctgtcacaacctaagtacctaatctagggttgc 34129519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 16522784 - 16522746
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  16522784 taggtcctgtcacaacctaagtatctaatctagggttgc 16522746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 23388459 - 23388421
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  23388459 taggccttgtcacaacctaagtacctaatctagggttgc 23388421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 18207484 - 18207451
Alignment:
Q  34 tgtcacaacctaagtatctaatctagggttgcgc 67  Q
    |||||||||||||||| |||||||||||||||||    
T  18207484 tgtcacaacctaagtacctaatctagggttgcgc 18207451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 38443034 - 38443157
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  38443034 gagtccatctttgctccatttaagtctgctccatttaccccatttaccatcatggatgtgtgacatgtggcaaaatagaaaaccaagggttgagattaaa 38443133  T
Q  296 agtgttggaaaaaacacttgtttt 319  Q
    || |||||||||| ||||||||||    
T  38443134 agggttggaaaaagcacttgtttt 38443157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 38443667 - 38443543
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||  |||||||    
T  38443667 gagtccatctttgctccatttaagtttgctccatttaccccatttacc-------atgtgtgacatgtggcaaaatagaaaatcaagggctaggattaaa 38443575  T
Q  296 agtgttggaaaaaacacttgtttttatcaaaa 327  Q
    |  |||||||||| ||||||||||| ||||||    
T  38443574 aaggttggaaaaatcacttgtttttgtcaaaa 38443543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 42578709 - 42578819
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||   ||||| ||||| ||||||||||||||| | |||||||| |||||||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaa-ataaaatcaatggctgagattaaa 42578807  T
Q  296 agtgttggaaaa 307  Q
    ||  ||||||||    
T  42578808 agatttggaaaa 42578819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 41889322 - 41889444
Alignment:
Q  195 agagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaa 294  Q
    |||||||||| ||| ||||||||||   ||||||||||| || |||  |    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  41889322 agagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagggctgagattaa 41889421  T
Q  295 aagtgttggaaaaaacacttgtt 317  Q
    ||| |||||||||| ||||||||    
T  41889422 aagggttggaaaaatcacttgtt 41889444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 44870159 - 44870230
Alignment:
Q  248 tggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgtttt 319  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||| || |||||||    
T  44870159 tggatgtgtgacatgtcgcaaaatagaaaatcaagggttgagattaaaagggttgaaaaaatcatttgtttt 44870230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 10911043 - 10910970
Alignment:
Q  235 ccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaa 308  Q
    |||||| || ||||||||||||||||||||| ||||||||||| ||| |||| |||||||||| ||||||||||    
T  10911043 ccatttaccatcatggatgtgtgacatgtggtaaaatagaaaaccaatggctaagattaaaagggttggaaaaa 10910970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 42503029 - 42503136
Alignment:
Q  199 tccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagt 298  Q
    |||||| ||||||||||||||||| ||| |||||||||||||    |||| |||||||||||||| | |||| | |||||||| ||||| |||||||||     
T  42503029 tccatctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtag-aaaaaataaaatcaatggctgtgattaaaagg 42503127  T
Q  299 gttggaaaa 307  Q
     ||||||||    
T  42503128 tttggaaaa 42503136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 6462684 - 6462610
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||   ||| | ||||| |||||||||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaa 6462610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 17625634 - 17625708
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    ||||||||| |||||||||||| | |||| ||||||||||||||| || ||||||||||| |||| ||| |||||    
T  17625634 gagtccatctttgctccatttaggcttgcaccatttaccccatttaccttcatggatgtgcgacacgtgtcaaaa 17625708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 44870899 - 44870829
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaa 276  Q
    ||||||||||||||||||||| ||||||| ||||| |  | |||||||| |||||||||| ||||||||||    
T  44870899 ttgctccatttaagtttgctcgatttaccacatttactattatggatgtctgacatgtggtaaaatagaaa 44870829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 6885861 - 6885906
Alignment:
Q  28 aggccctgtcacaacctaagtatctaatctagggttgcgcctacta 73  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||    
T  6885861 aggcgctgtcacaacctaagtatctaatttagggttgcgcctacta 6885906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 28276011 - 28275956
Alignment:
Q  20 ataatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||    
T  28276011 ataatgttaggccatgttacaacctaagtatataatctagggttgcgtctactaca 28275956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 17943072 - 17943014
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    ||||||||||| | ||||||| ||||||||||||||  | |||||||||||||||||||    
T  17943072 ttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgacatgtg 17943014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 11519350 - 11519462
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| |||||| ||||| ||||  || |||||||||||||    |||| |||||||||||||||| |||| | ||||||||  |||| |||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtggaaaaaaataaaatcaatagctgtgattaaa 11519449  T
Q  296 agtgttggaaaaa 308  Q
    ||  |||||||||    
T  11519450 aggtttggaaaaa 11519462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 27660224 - 27660260
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27660224 taggccctgtcacaacctaagtacctaatctagggtt 27660260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 7870442 - 7870332
Alignment:
Q  195 agagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaa 294  Q
    |||||||||| ||||||||||||   || ||| ||||||||||||||  || || |||||||||||| ||| |||| | |||||||| || || ||||||    
T  7870442 agagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgacatatgg-aaaaaataaaatcaatggttgtgattaa 7870344  T
Q  295 aagtgttggaaa 306  Q
    |||  |||||||    
T  7870343 aaggtttggaaa 7870332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 17626407 - 17626348
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    |||||||||||   ||||| ||||||||||||||| || |||||||||||||||| ||||    
T  17626407 ttgctccatttgtctttgcaccatttaccccatttaccatcatggatgtgtgacacgtgg 17626348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 21315523 - 21315558
Alignment:
Q  37 cacaacctaagtatctaatctagggttgcgcctact 72  Q
    |||| |||||||||||||||||||||||||||||||    
T  21315523 cacagcctaagtatctaatctagggttgcgcctact 21315558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 38443695 - 38443805
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||||| | | |||||||||||||   ||||| | || ||||||||| | |||| | |||||||| | ||| |||||||    
T  38443695 gagtccatctttgctccatttaagtttccacaatttaccccatttcaagtcatagttgcgtgacatgtag-aaaaaataaaatcaatgactgtgattaaa 38443793  T
Q  296 agtgttggaaaa 307  Q
    ||  ||||||||    
T  38443794 aggtttggaaaa 38443805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 42503990 - 42503880
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||| | || ||| ||||||||||||     |||| |||||||||||||||| |||| | ||||| || ||||| |||||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtgg-aaaaaataaaattaatggctgtgattaaa 42503892  T
Q  296 agtgttggaaaa 307  Q
    ||  ||||||||    
T  42503891 aggtttggaaaa 42503880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 2637899 - 2637937
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  2637899 taggcactatcacaacctaagtatctaatctagggttgc 2637937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 17997400 - 17997438
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  17997400 taggtcctgtcacaacctaagtacctaatctagggttgc 17997438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 23892421 - 23892383
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  23892421 taggtcctgtcacaacctaagtacctaatctagggttgc 23892383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 23868743 - 23868702
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  23868743 aatgttaggtcctgtcacaacctaagtacctaatctagggtt 23868702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25226960 - 25227001
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||| |||||||||||||||||||| || |||||||||||||    
T  25226960 aatgttaggccctgtcacaacctaactacctaatctagggtt 25227001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 13314199 - 13314163
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  13314199 taggctctgtcacaacctaagtacctaatctagggtt 13314163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 17938175 - 17938286
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| ||||||||||| | ||||||| ||||||||||||||    |||||||||| || |||||| |||| | |||||||| || || |||||||    
T  17938175 gagtgcatctttgctccatttcactttgctcaatttaccccatttgaatacatggatgtgcgaaatgtgg-aaaaaataaaatcaatgggtgtgattaaa 17938273  T
Q  296 agtgttggaaaaa 308  Q
     |  |||||||||    
T  17938274 tggattggaaaaa 17938286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 24722868 - 24722836
Alignment:
Q  33 ctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||| |||||||||||||||    
T  24722868 ctgtcacaacctaagtacctaatctagggttgc 24722836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 25181644 - 25181612
Alignment:
Q  33 ctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||||||||||| ||||||||||||||||||    
T  25181644 ctgtcacaacctaaatatctaatctagggttgc 25181612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 49385085 - 49385217
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||  ||||||    
T  49385085 gagtccatctttgctccatttaagtttgcatcatttaccccatttacaatcatggatgtgtgacatgtggaaaaatagaaaatcaagggctggaattaaa 49385184  T
Q  296 agtgttggaaaaaacacttgtttttatcaaaag 328  Q
    ||  |||||||||||||||||||| || |||||    
T  49385185 aggcttggaaaaaacacttgttttaataaaaag 49385217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 49385851 - 49385729
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||| ||||| | |||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||  ||||| ||||||||||    
T  49385851 gagtccatctttgctcaatttaggattgcaccatttaccccatttaccatcatggatatgtgacatgtggcaaaatagaaaactaagggttgagattaaa 49385752  T
Q  296 agtgttggaaaaaacacttgtttt 319  Q
    || ||||| |||||||||||||||    
T  49385751 agggttgg-aaaaacacttgtttt 49385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26648242 - 26648185
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26648242 aatgttaggccctgccacaacctaagtatctaatctagggttgcgcctactacaaaaa 26648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 2428537 - 2428461
Alignment:
Q  235 ccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaaca 311  Q
    |||||| || |||||||||||||||||||||||||||| | ||||||||| || ||||||||| |||||||||||||    
T  2428537 ccatttaccatcatggatgtgtgacatgtggcaaaataaataatcaagggttgggattaaaagggttggaaaaaaca 2428461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 1764516 - 1764614
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||  | |||||||||| ||||||||||||||| | | |||||| || ||||||||||    
T  1764516 gagtccatctttgctccatttaagtttgctcaatttaccctatttatcatcatggatgtatgacatgtggcaaaa-atataatcaaaggttgagattaaa 1764614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 15667604 - 15667673
Alignment:
Q  248 tggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgtt 317  Q
    |||||||||||||||||||||||  |||||||||| |||| ||||||||| |||||||||| ||||||||    
T  15667604 tggatgtgtgacatgtggcaaaaatgaaaatcaagtgctgggattaaaagggttggaaaaatcacttgtt 15667673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 15668348 - 15668227
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||   ||||||||||| || |||  |    |||||||||||||||||||||||  |||||||||| | || |||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagtgatgggattaaa 15668249  T
Q  296 agtgttggaaaaaacacttgtt 317  Q
    || |||||||||| ||||||||    
T  15668248 agggttggaaaaatcacttgtt 15668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 27890568 - 27890645
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatag 273  Q
    ||||||||| |||||||||||   ||||||| ||||| || |||| || |||||||||||||||||||||||||||||    
T  27890568 gagtccatctttgctccatttgcctttgctcaatttatcctatttaccatcatggatgtgtgacatgtggcaaaatag 27890645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 15812358 - 15812302
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    |||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||    
T  15812358 aatgttaggccttgtcacaacctaagtatc-aatctagggttgcgtctactacaaaaa 15812302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 27891355 - 27891278
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatag 273  Q
    ||||||||| ||||||||||||  ||| ||| ||||| ||||||| ||  ||||||||| ||||||||||||||||||    
T  27891355 gagtccatctttgctccatttatctttactcaatttatcccatttaccaacatggatgtctgacatgtggcaaaatag 27891278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 44796266 - 44796319
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||||| ||||||||| |||||||||||||||||| |||||||||||    
T  44796266 aatgttaggccctatcacaacctgagtatctaatctagggttacgcctactaca 44796319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 7338867 - 7338757
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||| |||| ||| |||||| ||||||   ||||| ||||||| |||||||| |||| | |||||||| || || |||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtgg-aaaaaataaaatcaatggttgtgattaaa 7338769  T
Q  296 agtgttggaaaa 307  Q
    |||  |||||||    
T  7338768 agttgtggaaaa 7338757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 18735463 - 18735425
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18735463 taggccctgtcacaacctaagtacctaatctagggttgc 18735425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 25403303 - 25403265
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  25403303 taggccctgtcacaacctaagtacctaatctagggttgc 25403265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 21985230 - 21985193
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttg 64  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21985230 taggccctgtcacaacctaagtacctaatctagggttg 21985193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 12209468 - 12209504
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12209468 taggccatgtcacaacctaagtatctaatctagggtt 12209504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 26021605 - 26021645
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgc 67  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  26021605 taggccatgtcacaacctaagtacctaatctagggttgcgc 26021645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 728348 - 728386
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  728348 taggtcctgtcacaacctaagtacctaatctagggttgc 728386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 14781075 - 14781037
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  14781075 taggtcctgtcacaacctaagtacctaatctagggttgc 14781037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 18826535 - 18826573
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18826535 taggccctgtcacaacctaagttcctaatctagggttgc 18826573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 21333971 - 21333934
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttg 64  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  21333971 taggctctgtcacaacctaagtatctaatctatggttg 21333934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 49399549 - 49399610
Alignment:
Q  199 tccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    |||||| |||||||||||   ||||||| ||||||||||||| || | ||||||||||||||    
T  49399549 tccatctttgctccatttgcctttgctcaatttaccccatttaccttgatggatgtgtgaca 49399610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 2367611 - 2367543
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    |||| |||| ||||||||||| | ||| ||| |||||||||||||   || ||||||||||||||||||    
T  2367611 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 2367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 13267035 - 13267071
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  13267035 taggctctgtcacaacctaagtatctaatctacggtt 13267071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 15159724 - 15159688
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  15159724 taggctctgtcacaacctaagtacctaatctagggtt 15159688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 18528445 - 18528397
Alignment:
Q  31 ccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||||||||||||||||| |||||||| |||||| ||||  |||||||    
T  18528445 ccctgtcacaacctaagtacctaatctacggttgcacctatcacaaaaa 18528397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 49400355 - 49400291
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    ||||||||| |||||||||||   ||||||| ||||| ||||||| || ||||| ||||||||||    
T  49400355 gagtccatctttgctccatttgcctttgctcaatttatcccatttaccttcatgcatgtgtgaca 49400291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 8923695 - 8923584
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||  |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  8923695 gagtccatctttgctccatttgggtttgctccatttaccccatttaccatcatggatgtgtgacatgtggcaaattagaaaaccaagggctgggattaaa 8923596  T
Q  296 agtgttggaaaa 307  Q
    || |||||||||    
T  8923595 agggttggaaaa 8923584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 8922884 - 8923015
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| || ||||||||| |||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  8922884 gagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaaccaagggctgggattaaa 8922983  T
Q  296 agtgttggaaaaaacacttgtttttatcaaaa 327  Q
    |  |||| ||||| ||||||||||||| ||||    
T  8922984 aaggttgtaaaaagcacttgtttttataaaaa 8923015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 34328382 - 34328511
Alignment:
Q  190 ttaatagagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgag 289  Q
    ||||| |||| |||| ||| |||||||| ||||||||||||||| || ||| || | || |||||||||||||||| ||||||||||||||| |||||||    
T  34328382 ttaattgagttcatctttgttccatttaggtttgctccatttactccgtttaccataatagatgtgtgacatgtggtaaaatagaaaatcaaaggctgag 34328481  T
Q  290 attaaaagtgttggaaaaaacacttgtttt 319  Q
    |||||||||||| |||||||||| ||||||    
T  34328482 attaaaagtgttagaaaaaacacctgtttt 34328511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 41325822 - 41325934
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| || ||||||||| |||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41325822 gagttcatctttactccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgggattaaa 41325921  T
Q  296 agtgttggaaaaa 308  Q
    |  ||||||||||    
T  41325922 aaggttggaaaaa 41325934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 1772877 - 1772989
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaa 305  Q
    ||||||||||||||||||||| ||||||||||||| |  |||||||| |||||||||||||||||||||||| |||||| || ||||||||| |||| ||    
T  1772877 ttgctccatttaagtttgctcaatttaccccatttactatcatggatatgtgacatgtggcaaaatagaaaaccaagggttgggattaaaag-gttgaaa 1772975  T
Q  306 aaaacacttgtttt 319  Q
    ||| ||||||||||    
T  1772976 aaagcacttgtttt 1772989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 7267523 - 7267434
Alignment:
Q  230 ttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgtttt 319  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  7267523 ttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaaccaaaggctgagattaaaagggttggaaaaaacacttgtttt 7267434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 50107567 - 50107680
Alignment:
Q  195 agagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaa 294  Q
    ||||| |||| || || |||||| |||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50107567 agagttcatctttactacatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggcaaaatagaaaaccaagggctgagattaa 50107666  T
Q  295 aagtgttggaaaaa 308  Q
    ||  ||||||||||    
T  50107667 aaaggttggaaaaa 50107680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 220 - 319
Target Start/End: Complemental strand, 10991127 - 10991028
Alignment:
Q  220 tttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgtttt 319  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||  ||||||||  |||||||  |||||||||||||||||||||    
T  10991127 tttgctccatttaccccatttaccatcatagatgtgtgacatgtggcaaaatagaaaacaaagggctggaattaaaatggttggaaaaaacacttgtttt 10991028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 41326608 - 41326498
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||  ||||||||||||||||| |||| || |||||||||||||||||||||||||  |||||| ||||||||| |||||||    
T  41326608 gagtccatctttgctccatttgggtttgctccatttacccaatttaccatcatggatgtgtgacatgtggcaaatcagaaaaccaagggctg-gattaaa 41326510  T
Q  296 agtgttggaaaa 307  Q
    || |||||||||    
T  41326509 agggttggaaaa 41326498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 50108363 - 50108256
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||||| || |||||||||||  ||||||||||||||||| |||| ||   ||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  50108363 gagtccgtctttgctccatttgggtttgctccatttacccaatttacc---atggatgtgtgacatgtggcaaattagaaaaccaagggctg-gattaaa 50108268  T
Q  296 agtgttggaaaa 307  Q
    || |||||||||    
T  50108267 agggttggaaaa 50108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 1773676 - 1773592
Alignment:
Q  224 ctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaa 308  Q
    ||||||||| ||||||| || |||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||    
T  1773676 ctccatttatcccatttaccatcatagatgtgtgatatgtggcaaaatagaaaatcaagggctgagattagaaatgttgaaaaaa 1773592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 319
Target Start/End: Complemental strand, 34329196 - 34329069
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctg----agat 291  Q
    ||||||||| ||||| ||||||  ||||||| |||||| |||||| |  |||||||||||||||||||| |||||||||||| |||| ||||    | ||    
T  34329196 gagtccatctttgcttcatttatttttgctcaatttactccatttactatcatggatgtgtgacatgtgacaaaatagaaaaccaagagctgtgataaat 34329097  T
Q  292 taaaagtgttggaaaaaacacttgtttt 319  Q
    ||||||||||||||| | ||||||||||    
T  34329096 taaaagtgttggaaagagcacttgtttt 34329069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 52103603 - 52103682
Alignment:
Q  191 taatagagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    |||| ||||||||| ||||| |||||| |||||||||||||||||||||| |  |||||||||||||| |||||| ||||    
T  52103603 taatggagtccatctttgcttcatttaggtttgctccatttaccccatttactatcatggatgtgtgatatgtggaaaaa 52103682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 23514554 - 23514480
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    ||||||||| |||||||||||   ||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  23514554 gagtccatctttgctccatttgcctttgctcaatttaccccatttactatcatggatgtgtgacatgtggcaaaa 23514480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 16222255 - 16222308
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  16222255 aatgttaggccttgtcacaacctaagtatctaatctagagttgcgcctactaca 16222308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 41509359 - 41509397
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41509359 taggccctgtcacaacctaagtatctaatctagggttgc 41509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 16436524 - 16436601
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatag 273  Q
    ||||||||| ||||||| |||   ||||||| ||||| ||||||| || ||||||||||||||||| |||||||||||    
T  16436524 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatag 16436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 3115617 - 3115569
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  3115617 taggccatgtcacaacctaagtatctaatctagggttgcatctactaca 3115569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 25851901 - 25851861
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgc 67  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  25851901 taggccctgtcacaacctaagtacctaatctagggttgcgc 25851861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 12805397 - 12805359
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  12805397 taggccctgtcacaacctaagtacctaatctagggttgc 12805359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 5509230 - 5509283
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||| |||||||||||||||||||||| | |||||||| ||||||||    
T  5509230 aatgttaggccttgtcacaacctaagtatctaatatggggttgcgtctactaca 5509283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 8116166 - 8116129
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttg 64  Q
    |||||| |||||||||||||||||||||||||||||||    
T  8116166 taggccatgtcacaacctaagtatctaatctagggttg 8116129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 40810349 - 40810280
Alignment:
Q  201 catcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    |||| ||||||||||||||||| ||| ||||| |||||||   |||||||||||||||||  ||||||||    
T  40810349 catctttgctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggcaaaa 40810280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 46461912 - 46461964
Alignment:
Q  245 tcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagt 298  Q
    |||||||||| |||||||||||||| || |||||||| ||||||||||||||||    
T  46461912 tcatggatgtttgacatgtggcaaa-tataaaatcaatggctgagattaaaagt 46461964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 2166877 - 2166846
Alignment:
Q  34 tgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||||||||||||    
T  2166877 tgtcacaacctaagtatctaatctagggttgc 2166846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 20430645 - 20430680
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggt 62  Q
    |||||| |||||||||||||||||||||||||||||    
T  20430645 taggccttgtcacaacctaagtatctaatctagggt 20430680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 17057127 - 17057224
Alignment:
Q  220 tttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgttt 318  Q
    |||||||||||||||||  ||  | || | ||||||||||| |||||||||  ||||  ||| || ||||||||||||  |||||||||||||||||||    
T  17057127 tttgctccatttacccctgttcacttcttagatgtgtgacacgtggcaaaaatgaaac-caacggttgagattaaaaggtttggaaaaaacacttgttt 17057224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 20122204 - 20122166
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  20122204 taggccctgtcacatcctaagtacctaatctagggttgc 20122166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 27413546 - 27413508
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  27413546 taggctctgtcacaacctaaatatctaatctagggttgc 27413508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 10987867 - 10987948
Alignment:
Q  235 ccatttgccgtcatggatgtgtgacatgtggcaaaa-tagaaaatcaagggctgagattaaaagtgttggaaaaaacacttg 315  Q
    |||||| || |||| |||||||||||||||| |||| |||||||||||  |||  ||||||||| |||| ||||| ||||||    
T  10987867 ccatttaccatcatagatgtgtgacatgtggaaaaaatagaaaatcaacagctacgattaaaagggttgaaaaaagcacttg 10987948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 55444649 - 55444576
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaa 269  Q
    ||||||||| ||||| ||||||||  ||||||||||| ||| |||  | | || ||||||||||||||||||||    
T  55444649 gagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaa 55444576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 3430153 - 3430125
Alignment:
Q  36 tcacaacctaagtatctaatctagggttg 64  Q
    |||||||||||||||||||||||||||||    
T  3430153 tcacaacctaagtatctaatctagggttg 3430125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 19171046 - 19171002
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctac 71  Q
    |||||| |||||||||| ||||||||||| ||||||||| |||||    
T  19171046 taggccatgtcacaaccaaagtatctaatatagggttgcacctac 19171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 35903690 - 35903758
Alignment:
Q  197 agtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    |||| ||| |||||||||||| |||  ||| |||||||||||||   || |||||||||||||||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 44312437 - 44312393
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccattt 240  Q
    ||||||||| |||||||||||| |||| ||| |||||||||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaatttaccccattt 44312393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 48204147 - 48204261
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||||||||||||||||||||||||||| || |||| || |||||||||| ||||||||||||||| | |||||||| |||||||||||||    
T  48204147 gagtccatctttgctccatttaagtttgctccatttatcctatttaccatcatggatgtatgacatgtggcaaaagaaaaaatcaaaggctgagattaaa 48204246  T
Q  296 agtgttggaaaaaac 310  Q
    || ||||||||||||    
T  48204247 agggttggaaaaaac 48204261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 48205018 - 48204926
Alignment:
Q  219 gtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaaca 311  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  48205018 gtttgctccatttacaccatttaccatcatggatgtgtgacatgtggcaaaataaaaaatcaagggctgggattaaaagggttggaaaaaaca 48204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 18923496 - 18923387
Alignment:
Q  210 tccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaa 309  Q
    ||||||| ||||||||||||||| | ||||| |  | |||||||||||| ||||| ||||||||||||  || || ||||||||||||||||| |||||     
T  18923496 tccatttgagtttgctccatttatctcatttactattatggatgtgtgatatgtgacaaaatagaaaactaatggttgagattaaaagtgttgaaaaaag 18923397  T
Q  310 cacttgtttt 319  Q
    ||||||||||    
T  18923396 cacttgtttt 18923387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 318
Target Start/End: Complemental strand, 35753137 - 35753012
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctc----catttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagat 291  Q
    ||||||||| |||||||||||| |||| |||     |||||||||||||  |||||| ||||| ||||||||||||||| | |||||||| ||||| |||    
T  35753137 gagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaa-ataaaatcaatggctgtgat 35753039  T
Q  292 taaaagtgttggaaaaaacacttgttt 318  Q
    ||||||  |||||||||||||||||||    
T  35753038 taaaagatttggaaaaaacacttgttt 35753012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 9131699 - 9131750
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  9131699 taggccttgtcacaacctaagtatctaatctagggttgcg-ctactacaaaaa 9131750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 16981314 - 16981243
Alignment:
Q  199 tccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |  | ||| ||||||||||||||| ||||    
T  16981314 tccatctttgctccatttaagtttgctccaattaccccatttactattatgaatgtgtgacatgtggaaaaa 16981243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 39272377 - 39272331
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctacta 73  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  39272377 taggccctgtcgcaacctaagtatctaatctagggttgcacctacta 39272331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1585435 - 1585488
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  1585435 aatgttaggccttgtcacaacctaagtctctaatctagggttgcgcctaataca 1585488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 2573878 - 2573825
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  2573878 aatgttaggccatgtcacaacctaagtatctaatctagggttgtgtctactaca 2573825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 19154109 - 19154162
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  19154109 aatgttaggccctgtcacaacctaagtatctaatatagggttgcgtatactaca 19154162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 20753508 - 20753561
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  20753508 aatgttaggccctgtcacaacctaagtatctaatatagggttgcgtatactaca 20753561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 43844793 - 43844905
Alignment:
Q  195 agagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaa 294  Q
    ||||| |||| ||||||||||| | ||||||| |||||||||||||   | |||||||||||||||||| | |||| | |||||||| ||||| ||||||    
T  43844793 agagtgcatctttgctccatttcactttgctcaatttaccccatttaaagacatggatgtgtgacatgt-gtaaaaaataaaatcaatggctgtgattaa 43844891  T
Q  295 aagtgttggaaaaa 308  Q
    | |  |||||||||    
T  43844892 atggcttggaaaaa 43844905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 8318398 - 8318360
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  8318398 taggccctgtcacaacctaagtacctaatctagggttgc 8318360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 32492585 - 32492635
Alignment:
Q  222 tgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaata 272  Q
    ||||||||||||||||||  || | ||||||||||||||||||||||||||    
T  32492585 tgctccatttaccccattgacctttatggatgtgtgacatgtggcaaaata 32492635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 5107536 - 5107581
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgc 67  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||    
T  5107536 aatgttaggccctgtcagaacctaagtatctaatctaggattgcgc 5107581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 8978211 - 8978170
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  8978211 aatgttaggccctgtcacaacctaagtatctaatatagggtt 8978170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 35752336 - 35752446
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaa 305  Q
    |||||||||||  |||||||| ||||| ||||||| |  |||| ||||| ||||||||||||||| | |||||||| || || |||||||||  ||| ||    
T  35752336 ttgctccattttggtttgctcaatttatcccattt-caatcatagatgtatgacatgtggcaaaa-ataaaatcaatggttgtgattaaaaggtttgaaa 35752433  T
Q  306 aaaacacttgttt 318  Q
    |||||| ||||||    
T  35752434 aaaacatttgttt 35752446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 4126698 - 4126761
Alignment:
Q  201 catcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    |||| ||||||||||| | ||||||| ||||||||||||||  | |||||||| ||||||||||    
T  4126698 catctttgctccatttcactttgctcaatttaccccatttgaagacatggatgcgtgacatgtg 4126761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 9256947 - 9256904
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  9256947 aatgttaggccatgtcacaacctaagtacctaatctagggttgc 9256904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 9313303 - 9313346
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  9313303 aatgttaggccatgtcacaacctaagtacctaatctagggttgc 9313346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 8053321 - 8053283
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  8053321 taggccatgtcacaacctaagtacctaatctagggttgc 8053283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 8878179 - 8878217
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  8878179 taggccctgtcacaacctaagtacctaatcttgggttgc 8878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 10270865 - 10270927
Alignment:
Q  201 catcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgt 263  Q
    ||||||||||||||||| || ||||| |||||||| ||||   ||||| ||||||||||||||    
T  10270865 catcattgctccatttaggtgtgctctatttacccaattttaagtcatagatgtgtgacatgt 10270927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 18948273 - 18948208
Alignment:
Q  245 tcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaaca 311  Q
    |||||||||| ||||||||||| ||||| ||||| || |||||||||||||||  || |||||||||    
T  18948273 tcatggatgtttgacatgtggc-aaatataaaattaatggctgagattaaaaggcttagaaaaaaca 18948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 22492560 - 22492506
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    |||||||||||   ||||||||||||| ||||||| || ||||||||||||||||    
T  22492560 ttgctccatttgcctttgctccatttatcccatttaccatcatggatgtgtgaca 22492506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 23752843 - 23752766
Alignment:
Q  220 tttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagt 298  Q
    ||||||| ||||| ||||||| || ||||||||||||||||| |||| ||| | |||| ||||||||  ||||||||||    
T  23752843 tttgctcaatttatcccatttaccatcatggatgtgtgacatctggccaaa-ataaaaccaagggctaggattaaaagt 23752766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 43845946 - 43845845
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaa 305  Q
    ||||||||||| | ||||||| ||||||||||||||  | |||||||||| ||||| ||| |||| | |||||||| || || ||||||| |  ||||||    
T  43845946 ttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgcgacatatgg-aaaaaataaaatcaatggttgtgattaaatggcttggaa 43845848  T
Q  306 aaa 308  Q
    |||    
T  43845847 aaa 43845845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 39020957 - 39021018
Alignment:
Q  220 tttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaa 281  Q
    ||||||| |||||||||||||   | |||||||||||||||||||| |||| | ||||||||    
T  39020957 tttgctcaatttaccccatttcaagacatggatgtgtgacatgtggaaaaaaataaaatcaa 39021018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 5956439 - 5956507
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    |||| |||| ||||||||||| | ||| ||| |||||||||||||   || ||||||||||||||||||    
T  5956439 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 5956507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 5961061 - 5960993
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    |||| |||| ||||||||||| | ||| ||| |||||||||||||   || ||||||||||||||||||    
T  5961061 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgtg 5960993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 17077951 - 17077987
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17077951 taggccctatcacaacctaagtacctaatctagggtt 17077987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 46164426 - 46164474
Alignment:
Q  222 tgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    |||||||||||||||||||   ||| |||||| ||||||||||||||||    
T  46164426 tgctccatttaccccatttagggtcttggatgagtgacatgtggcaaaa 46164474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 3295870 - 3295742
Alignment:
Q  191 taatagagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgaga 290  Q
    |||| |||||| || ||||| |||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||| |||||| || ||    
T  3295870 taattgagtccgtctttgcttcatttaggtttgctccatttaccccatttaccatcatggatatgtgacatgtgccaaaatagaaaaccaagggttggga 3295771  T
Q  291 ttaaaagtgttggaaaaaacacttgtttt 319  Q
    |||||||||||||||| | ||||||||||    
T  3295770 ttaaaagtgttggaaagagcacttgtttt 3295742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 3295113 - 3295154
Alignment:
Q  286 tgagattaaaagtgttggaaaaaacacttgtttttatcaaaa 327  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  3295113 tgagattaaaagtgttggaaaaagcacttgtttttatcaaaa 3295154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 20005126 - 20005088
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  20005126 taggccctgtcacaacctaagtagctaatctagggttgc 20005088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 20144301 - 20144263
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  20144301 taggctctgtcacaacctaagtatctaatctagggttgc 20144263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 22188538 - 22188576
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22188538 taggctctgtcacaacctaagtatctaatctagggttgc 22188576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 8065866 - 8065903
Alignment:
Q  29 ggccctgtcacaacctaagtatctaatctagggttgcg 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8065866 ggccttgtcacaacctaagtatctaatctagggttgcg 8065903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9517623 - 9517680
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    |||| |||||| |||||||||||||||| ||||||||||||||| ||||  |||||||    
T  9517623 aatgttaggccatgtcacaacctaagtacctaatctagggttgcacctatcacaaaaa 9517680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 14638452 - 14638501
Alignment:
Q  30 gccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||||||||||||||||||||||| ||||||||||   |||||||||||    
T  14638452 gccctgtcacaacctaagtatctaacctagggttgcaggtactacaaaaa 14638501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 22409533 - 22409480
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| ||||||| |||||||||||||||||||||||| | |||| |||||||||    
T  22409533 aatgttaggcccggtcacaacctaagtatctaatctatgcttgcacctactaca 22409480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 1635855 - 1635895
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgc 67  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  1635855 taggccatgtcacaacctaagtatctaatatagggttgcgc 1635895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 6830057 - 6829946
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| ||||||||||| | ||| ||| |||||||||||||   || ||||||||||||||||| | | || |||||||||| ||||| |||||||    
T  6830057 gagtgcatctttgctccatttcactttcctcaatttaccccatttctagtaatggatgtgtgacatgt-gtataaaagaaaatcaatggctgtgattaaa 6829959  T
Q  296 agtgttggaaaaa 308  Q
     |  |||||||||    
T  6829958 tggcttggaaaaa 6829946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 34260116 - 34260184
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    ||||||||| |||||||||||   ||| ||| |||||||||||||   |||||||||||||||||||||    
T  34260116 gagtccatctttgctccattttcctttcctcaatttaccccatttcaagtcatggatgtgtgacatgtg 34260184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 27123757 - 27123714
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgccta 70  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  27123757 taggccctgtcacaacctaagtacctaatttagggttgcaccta 27123714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 21840999 - 21840961
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  21840999 taggccctgtcacaacctaagtacctaatctacggttgc 21840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 6826558 - 6826669
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| ||||||||||| | ||| ||| |||||||||||||    | ||||||||||||||||| | | || |||||||||| ||||| |||||||    
T  6826558 gagtgcatctttgctccatttcactttcctcaatttaccccatttctaataatggatgtgtgacatgt-gtataaaagaaaatcaatggctgtgattaaa 6826656  T
Q  296 agtgttggaaaaa 308  Q
     |  |||||||||    
T  6826657 tggcttggaaaaa 6826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 10838144 - 10838192
Alignment:
Q  248 tggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaa 296  Q
    ||||||||||||||||||||| | | |||| |||||||| |||||||||    
T  10838144 tggatgtgtgacatgtggcaacaaataaaaccaagggctaagattaaaa 10838192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 39311441 - 39311319
Alignment:
Q  195 agagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaa 294  Q
    |||||||||| |||||||||||||| || ||| |||||||||||||   ||||| |||||||||||||||| |||| | ||||||||  |||||||||||    
T  39311441 agagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtgg-aaaaaataaaatcaattgctgagattaa 39311343  T
Q  295 aagtgttggaaaaaacacttgttt 318  Q
    |||  ||| ||||| || ||||||    
T  39311342 aagctttgaaaaaagcaattgttt 39311319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 5470032 - 5469963
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgacatgtgg 5469963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 45621935 - 45621844
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||| ||||||||||||||||          |||||||||||||||||||| ||||||||||||||||||| || |||||||    
T  45621935 gagtccatctttgctccatttaggtttgctccatttacca---------tcatggatgtgtgacatgtgacaaaatagaaaatcaagggttgggattaaa 45621845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 36385886 - 36385774
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    |||| |||| ||||||||||| | ||||||| |||||||||||||   || ||||||||||||||||||  |||| | |||||||| ||||| |||||||    
T  36385886 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtaatggatgtgtgacatgtgtaaaaaaaaaaaatcaatggctgtgattaaa 36385787  T
Q  296 agtgttggaaaaa 308  Q
     |  |||||||||    
T  36385786 tggcttggaaaaa 36385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 45620878 - 45620962
Alignment:
Q  206 ttgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaa 296  Q
    ||||||||||||| ||||||| ||||| | ||||| || |||||      ||||||||||||||||||||||||||||| |||||||||||    
T  45620878 ttgctccatttaaatttgctcaatttatctcatttaccatcatg------tgacatgtggcaaaatagaaaatcaagggttgagattaaaa 45620962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 36386103 - 36386013
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggct 286  Q
    |||| |||| ||||||||||| | ||||||| |||||||||||||   |||||||||||||||||||||  |||| | |||||||| ||||    
T  36386103 gagtgcatctttgctccatttcactttgctcaatttaccccatttctagtcatggatgtgtgacatgtgtaaaaaaaaaaaatcaatggct 36386013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 55633554 - 55633631
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatag 273  Q
    ||||||||| ||||||| |||   ||||||| ||||| ||||||| || ||||||||||||||||| |||||||||||    
T  55633554 gagtccatctttgctccgtttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatag 55633631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 7583191 - 7583232
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  7583191 aatgttaggccctgtcacaacctaagtatctaatatagggtt 7583232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 39310396 - 39310496
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||||| || ||| ||||| |||||||   || || ||||| |||||||||| |||| | |||| ||| |||||||||||||    
T  39310396 gagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtgg-aaaaaataaaaccaatggctgagattaaa 39310494  T
Q  296 ag 297  Q
    ||    
T  39310495 ag 39310496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 24484784 - 24484883
Alignment:
Q  197 agtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaa 296  Q
    |||||||| |||||||||||||| || ||| ||||| || ||||   || || |||||||||||||||| |||| | |||| ||| ||||||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtgg-aaaaaataaaaccaatggctgagattaaaa 24484882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 52237635 - 52237699
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    ||||| ||| |||||||||||   ||||||| ||||||||||||| || ||||||||||||||||    
T  52237635 gagtctatctttgctccatttgcctttgctcaatttaccccatttaccttcatggatgtgtgaca 52237699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 52238378 - 52238314
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    ||||||||| ||||| |||||   ||||||| ||||||||||||| || ||||||||||||||||    
T  52238378 gagtccatctttgcttcatttgcctttgctcaatttaccccatttaccttcatggatgtgtgaca 52238314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 17336242 - 17336204
Alignment:
Q  40 aacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  17336242 aacctaagtatctaatctagggttgcg-ctactacaaaaa 17336204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 19560408 - 19560373
Alignment:
Q  28 aggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||||||||||||||||||||| |||||||||||||    
T  19560408 aggccctgtcacaacctaagtacctaatctagggtt 19560373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 20829035 - 20829005
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatct 57  Q
    |||||||||||||||||||||||||||||||    
T  20829035 taggccctgtcacaacctaagtatctaatct 20829005  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 15165649 - 15165690
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  15165649 aatgttaggtcctgtcacaacctaagtacctaatctagggtt 15165690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 48956669 - 48956737
Alignment:
Q  228 atttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaag 297  Q
    |||||||||||||  | ||||||||||||||||||| | |||| | || |||||||| ||||||||||||    
T  48956669 atttaccccatttatcttcatggatgtgtgacatgt-gaaaaacacaatatcaagggttgagattaaaag 48956737  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 11781740 - 11781772
Alignment:
Q  33 ctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||||||||||||||||||||| |||||||||    
T  11781740 ctgtcacaacctaagtatctaatatagggttgc 11781772  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 17217759 - 17217795
Alignment:
Q  34 tgtcacaacctaagtatctaatctagggttgcgccta 70  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  17217759 tgtcacaacctaagtacctaatctagggttgcaccta 17217795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 17672885 - 17672925
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgc 67  Q
    ||||| ||||||||||||||||| |||||||| ||||||||    
T  17672885 taggctctgtcacaacctaagtacctaatctacggttgcgc 17672925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 34228147 - 34228248
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||||| || ||| |||||||||||||   || || |||||||||||||||| |||| | |||||||| | |||||||||||    
T  34228147 gagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtggaaaaaaataaaatcaatgcctgagattaaa 34228246  T
Q  296 ag 297  Q
    ||    
T  34228247 ag 34228248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 34229143 - 34229043
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| |||||||||||||| || ||| |||||||||||||   ||||| |||||||||||||||| |||| | |||| ||| |||||||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg-aaaaaataaaaccaatggctgagattaaa 34229045  T
Q  296 ag 297  Q
    ||    
T  34229044 ag 34229043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 41282629 - 41282702
Alignment:
Q  191 taatagagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||| || |||| ||||||||| ||||||    
T  41282629 taatagagtccatctttgctc-atttaagtttgctccatttacaccatttaccatcatagatgtgtgatatgtgg 41282702  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19199362 - 19199313
Alignment:
Q  30 gccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19199362 gccctgtcacaatctaagtatctaatatagggttgcgcctactacaaaaa 19199313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 35029930 - 35029829
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||| ||| |||||||||||| |||| ||| |||||||||||||   ||||| |||||||||||||||| |||| | |||||||| || || |||||||    
T  35029930 gagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtggaaaaaaacaaaatcaatggttgtgattaaa 35029831  T
Q  296 ag 297  Q
    ||    
T  35029830 ag 35029829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 41283024 - 41282955
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    ||||||||| || |||||||||||||||||| ||||||  ||||| || |||||||||||||||||||||    
T  41283024 gagtccatctttactccatttaagtttgctcaatttacatcatttaccatcatggatgtgtgacatgtgg 41282955  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 22568482 - 22568530
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  22568482 taggccctctcacaacctaagtatctaatctatggttgcgcctactaca 22568530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 10148630 - 10148561
Alignment:
Q  248 tggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacacttgttt 318  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||||||   |||||||||||||||||||    
T  10148630 tggatgtgtgacatgtggtaaaa-ataaaatcaagggttgagattaaaaagtttggaaaaaacacttgttt 10148561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 1233713 - 1233774
Alignment:
Q  209 ctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaa 270  Q
    ||||||||| |||| ||| ||||||||||||||  ||||||||||||||||| |||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggcaaaa 1233774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 13777319 - 13777372
Alignment:
Q  22 aatgctaggccctgtcacaacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||| |||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  13777319 aatgttaggccatgtcacaacctaaatatctaatatagggttgcgcctactaca 13777372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 318
Target Start/End: Complemental strand, 39062968 - 39062847
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaa 295  Q
    ||||||||| ||| |||||||| ||||| || |||||||| ||||   ||||| ||||| ||||||||||||| | | |||||||| ||||  |||||||    
T  39062968 gagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaaca-ataaaatcaatggctaggattaaa 39062870  T
Q  296 agtgttggaaaaaacacttgttt 318  Q
    ||  ||||||||| || ||||||    
T  39062869 aggtttggaaaaagcatttgttt 39062847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Complemental strand, 41993406 - 41993340
Alignment:
Q  207 tgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtggcaaaatag 273  Q
    |||||||||||  ||  ||||||||||||||||| || | |||||||||||||||||| ||||||||    
T  41993406 tgctccatttaccttaactccatttaccccatttacctttatggatgtgtgacatgtgacaaaatag 41993340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 20171839 - 20171788
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgcctactacaaaaa 79  Q
    ||||||||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  20171839 taggccctgtcacaacctatgtatctattctagggttgc-actactacaaaaa 20171788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 33361047 - 33361111
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgaca 260  Q
    ||||||||| ||||||||||||  ||||||| |||||  |||||| || ||||||||||||||||    
T  33361047 gagtccatctttgctccatttacctttgctcaatttataccatttaccttcatggatgtgtgaca 33361111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 15340158 - 15340193
Alignment:
Q  40 aacctaagtatctaatctagggttgcgcctactaca 75  Q
    |||||||||||||||||||||||||| |||||||||    
T  15340158 aacctaagtatctaatctagggttgcacctactaca 15340193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 10147838 - 10147903
Alignment:
Q  248 tggatgtgtgacatgtggcaaaatagaaaatcaagggctgagattaaaagtgttggaaaaaacactt 314  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||||   |||||||| ||||||    
T  10147838 tggatgtgtgacatgtggcaaaa-ataaaatcaagcgttgagattaaaaagtttggaaaatacactt 10147903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 17674915 - 17674879
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    |||||||||||| |||||||||| |||||||||||||    
T  17674915 taggccctgtcataacctaagtacctaatctagggtt 17674879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 18552441 - 18552477
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  18552441 taggccctgtcacaacctaagtacctagtctagggtt 18552477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 22378735 - 22378699
Alignment:
Q  34 tgtcacaacctaagtatctaatctagggttgcgccta 70  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  22378735 tgtcacaacctaagtacctaatctagggttgcaccta 22378699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 18481 - 18550
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtgg 265  Q
    ||||||||| || ||||||||||||||| || |||||| |||||| || |||||||||||||||||||||    
T  18481 gagtccatctttactccatttaagtttgttcaatttacaccatttaccatcatggatgtgtgacatgtgg 18550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 10856 - 10924
Alignment:
Q  196 gagtccatcattgctccatttaagtttgctccatttaccccatttgccgtcatggatgtgtgacatgtg 264  Q
    |||| |||| ||||||||||| | ||||||| ||||||||||||||  | |||||||||||||||||||    
T  10856 gagtgcatctttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgacatgtg 10924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 72930 - 72968
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  72930 taggctctgtcacaacctaagtatctaatctagggttgc 72968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 12160 - 12196
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggtt 63  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12160 taggccctgtcacaacctaagtacctaatctagggtt 12196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 102601 - 102558
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgcgccta 70  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||    
T  102601 taggccctgtcacaacctaagtacctaatccagggttgcaccta 102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 4916 - 4950
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctaggg 61  Q
    ||||||||||||||||||||||| |||||||||||    
T  4916 taggccctgtcacaacctaagtacctaatctaggg 4950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 4009 - 4047
Alignment:
Q  27 taggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  4009 taggccttgtcacaacctaagtacctaatctagggttgc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 2570 - 2615
Alignment:
Q  20 ataatgctaggccctgtcacaacctaagtatctaatctagggttgc 65  Q
    |||||| |||| ||| |||||||||||||| |||||||||||||||    
T  2570 ataatgttaggtcctatcacaacctaagtacctaatctagggttgc 2615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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