View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17698_high_15 (Length: 345)
Name: NF17698_high_15
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 177 - 340
Target Start/End: Original strand, 4562473 - 4562636
Alignment:
| Q |
177 |
agtcactcactcaggtaaactctgattaatgaagacagtaaaaggtgaaagtgacttgttaatagaaaattgttcagaagctgaagtgagagtaaagagg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4562473 |
agtcactcactcaggtaaactctgattaatgaagacagtaaaaggtgaaagtgacttgttaatagaaaattgttcagaagctgaagtgagagtaaagagg |
4562572 |
T |
|
| Q |
277 |
tataggtgttttgtagaaagatttttatttattcttttcttttgactattacacctttgcttct |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4562573 |
tataggtgttttgtagaaagatttttatttattcttttcttttgactattacacccttgcttct |
4562636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University