View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_16 (Length: 341)
Name: NF17698_high_16
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 195 - 328
Target Start/End: Complemental strand, 173459 - 173326
Alignment:
| Q |
195 |
tggtttacactagatttaattaatcacaataagtcttgttttactcatagggtttgtctaaccaattagcataagaatttgaataaccaattataaaaat |
294 |
Q |
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| T |
173459 |
tggtttacactagatttaattaatcacaataagtcttgttttactcatagggtttgtctaaccaattagcataagaatttgaataaccaattataaaaat |
173360 |
T |
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| Q |
295 |
ttcactatattagcataagaatttcagtataaat |
328 |
Q |
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| T |
173359 |
ttcactatattagcaaaagaatttcagtataaat |
173326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 173532 - 173449
Alignment:
| Q |
94 |
atctttttgaatttttcataatgttcatgatcttatttgagattgattgtcctacaatgtttgagagaacaagatggtttacact |
178 |
Q |
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| T |
173532 |
atctttttgaatttttcataatgt-catgatcttatttgagattgatagtcctacaatgtttgagagaagaagatggtttacact |
173449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 180019 - 179949
Alignment:
| Q |
21 |
tagttattttttagaaagaacaaaaagatttaaaagagtaagtaagtcattaaattaatttcgaactttgta |
92 |
Q |
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| T |
180019 |
tagttatttttctgaaagaacaaaaagatttaaa-gagtaagtaagtcattaaattaatttctaactttgta |
179949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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